Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KJS48_RS16525 Genome accession   NZ_AP024603
Coordinates   3377926..3378615 (-) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain KOF112     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3372926..3383615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJS48_RS16490 (KOF112_31860) fliW 3373017..3373448 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  KJS48_RS16495 (KOF112_31870) - 3373478..3374047 (-) 570 WP_007407476.1 DUF6470 family protein -
  KJS48_RS16500 (KOF112_31880) flgL 3374138..3375055 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  KJS48_RS16505 (KOF112_31890) flgK 3375067..3376584 (-) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  KJS48_RS16510 (KOF112_31900) - 3376600..3377082 (-) 483 WP_032876168.1 flagellar protein FlgN -
  KJS48_RS16515 (KOF112_31910) flgM 3377097..3377363 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KJS48_RS16520 (KOF112_31920) - 3377433..3377852 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  KJS48_RS16525 comFC 3377926..3378615 (-) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  KJS48_RS16530 (KOF112_31940) - 3378621..3378905 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  KJS48_RS16535 (KOF112_31950) comFA 3378963..3380348 (-) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  KJS48_RS16540 (KOF112_31960) - 3380457..3381305 (-) 849 WP_032876160.1 DegV family protein -
  KJS48_RS16545 (KOF112_31970) degU 3381403..3382092 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KJS48_RS16550 (KOF112_31980) degS 3382169..3383332 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=86446 KJS48_RS16525 WP_196770545.1 3377926..3378615(-) (comFC) [Bacillus velezensis strain KOF112]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=86446 KJS48_RS16525 WP_196770545.1 3377926..3378615(-) (comFC) [Bacillus velezensis strain KOF112]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment