Detailed information NTG0086440

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABK21_RS04000
• Genome accession: NZ_AP027494
• Coordinates: 829590..830615 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LR-24
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 824590..835615

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABK21_RS03980 (VEE13_07610)	metJ	825651..825968 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
AABK21_RS03985 (VEE13_07620)	yiiX	826152..826760 (+)	609	WP_032343322.1	YiiX family permuted papain-like enzyme	-
AABK21_RS03990 (VEE13_07630)	rpmE	826821..827033 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABK21_RS03995 (VEE13_07640)	priA	827236..829434 (+)	2199	WP_086625211.1	primosomal protein N'	Machinery gene
AABK21_RS04000 (VEE13_07650)	cytR	829590..830615 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABK21_RS04005 (VEE13_07660)	ftsN	830707..831666 (+)	960	WP_000068828.1	cell division protein FtsN	-
AABK21_RS04010 (VEE13_07670)	hslV	831759..832289 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABK21_RS04015 (VEE13_07680)	hslU	832299..833630 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AABK21_RS04020 (VEE13_07690)	menA	833697..834623 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABK21_RS04025 (VEE13_07700)	rraA	834716..835201 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABK21_RS04030 (VEE13_07710)	zapB	835286..835531 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=86440 AABK21_RS04000 WP_000644904.1 829590..830615(+) (cytR) [Escherichia coli strain LR-24]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=86440 AABK21_RS04000 WP_000644904.1 829590..830615(+) (cytR) [Escherichia coli strain LR-24]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628