Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   Q7620_RS02540 Genome accession   NZ_CP131713
Coordinates   498274..499005 (+) Length   243 a.a.
NCBI ID   WP_000889925.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2008C09-276     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 493274..504005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7620_RS02515 (Q7620_02510) - 494870..495226 (+) 357 WP_000114433.1 hypothetical protein -
  Q7620_RS02520 (Q7620_02515) dnaJ 495628..496764 (+) 1137 WP_001810236.1 molecular chaperone DnaJ -
  Q7620_RS02525 (Q7620_02520) - 497098..497337 (-) 240 WP_001810235.1 hypothetical protein -
  Q7620_RS02530 (Q7620_02525) - 497499..497786 (-) 288 WP_000777760.1 hypothetical protein -
  Q7620_RS02535 (Q7620_02530) - 497796..498206 (-) 411 WP_001278300.1 HIT family protein -
  Q7620_RS02540 (Q7620_02535) pptA 498274..499005 (+) 732 WP_000889925.1 ABC transporter ATP-binding protein Regulator
  Q7620_RS02545 (Q7620_02540) - 499002..500051 (+) 1050 WP_000653767.1 ABC transporter permease -
  Q7620_RS02550 (Q7620_02545) - 500219..500548 (-) 330 WP_000132572.1 hypothetical protein -
  Q7620_RS02555 (Q7620_02550) - 500825..501163 (+) 339 WP_000682135.1 LytTR family DNA-binding domain-containing protein -
  Q7620_RS02560 (Q7620_02555) comE/blpR 501168..501905 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  Q7620_RS02565 (Q7620_02560) - 501919..503259 (+) 1341 WP_001017638.1 sensor histidine kinase -
  Q7620_RS02570 (Q7620_02565) blpC 503301..503456 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26992.50 Da        Isoelectric Point: 4.7792

>NTDB_id=864328 Q7620_RS02540 WP_000889925.1 498274..499005(+) (pptA) [Streptococcus pneumoniae strain 2008C09-276]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMLRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=864328 Q7620_RS02540 WP_000889925.1 498274..499005(+) (pptA) [Streptococcus pneumoniae strain 2008C09-276]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGCTCCGTCTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.784

99.177

0.712
  pptA Streptococcus thermophilus LMD-9

70.954

99.177

0.704