Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   WHM01_RS04035 Genome accession   NZ_CP148105
Coordinates   830021..831190 (-) Length   389 a.a.
NCBI ID   WP_001161856.1    Uniprot ID   -
Organism   Escherichia coli strain Nissle     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 825021..836190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHM01_RS04020 - 825705..826739 (-) 1035 Protein_790 IS481 family transposase -
  WHM01_RS04025 kfiC 826900..828462 (+) 1563 WP_001305085.1 K5 polysaccharide biosynthesis glycosyltransferase KfiC -
  WHM01_RS04030 kfiD 828504..829682 (+) 1179 WP_001305084.1 K5 polysaccharide biosynthesis UDP-glucose dehydrogenase KfiD -
  WHM01_RS04035 kpsS 830021..831190 (-) 1170 WP_001161856.1 capsular biosynthesis protein Regulator
  WHM01_RS04040 - 831225..833252 (-) 2028 WP_000579513.1 capsular polysaccharide biosynthesis protein -
  WHM01_RS04045 kdsB 833249..833989 (-) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WHM01_RS04050 - 833999..835675 (-) 1677 WP_001305083.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 46397.64 Da        Isoelectric Point: 10.0934

>NTDB_id=864313 WHM01_RS04035 WP_001161856.1 830021..831190(-) (kpsS) [Escherichia coli strain Nissle]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSSYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERILYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVYY

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=864313 WHM01_RS04035 WP_001161856.1 830021..831190(-) (kpsS) [Escherichia coli strain Nissle]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTAGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGACACAATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGCCATGCTATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAACTGGACCAGCGTTATTATCTTGCTGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAGTTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGAATCCTTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCTGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTATTATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

100

0.398