Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WHL49_RS06730 Genome accession   NZ_CP148103
Coordinates   1295751..1296887 (+) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS361     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290751..1301887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL49_RS06710 uxaA 1291201..1292694 (+) 1494 WP_003245409.1 UxaA family hydrolase -
  WHL49_RS06715 yjnA 1292733..1293497 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  WHL49_RS06720 yjoA 1293722..1294186 (-) 465 WP_003245144.1 DinB family protein -
  WHL49_RS06725 yjoB 1294335..1295606 (+) 1272 WP_003245490.1 ATPase YjoB -
  WHL49_RS06730 rapC 1295751..1296887 (+) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  WHL49_RS06735 phrA 1296877..1297011 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  WHL49_RS06740 yjpA 1297042..1297299 (-) 258 WP_003232731.1 YciI family protein -
  WHL49_RS06745 xlyB 1297420..1298373 (+) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  WHL49_RS06750 yjqA 1298413..1298790 (-) 378 WP_003245254.1 PH domain-containing protein -
  WHL49_RS06755 pghB 1298896..1299498 (+) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  WHL49_RS06760 xpdC 1299575..1300411 (+) 837 WP_003245071.1 manganese catalase family protein -
  WHL49_RS06765 xkdA 1300455..1301051 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  WHL49_RS06770 xre 1301214..1301555 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=864036 WHL49_RS06730 WP_010886491.1 1295751..1296887(+) (rapC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=864036 WHL49_RS06730 WP_010886491.1 1295751..1296887(+) (rapC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS361]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418