Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   Q7624_RS02945 Genome accession   NZ_CP131709
Coordinates   555132..555398 (+) Length   88 a.a.
NCBI ID   WP_001814186.1    Uniprot ID   A0A654WS02
Organism   Streptococcus pneumoniae strain 2016S11-245     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 554603..554827 555132..555398 flank 305


Gene organization within MGE regions


Location: 554603..555398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7624_RS02940 (Q7624_02945) - 554603..555006 (+) 404 Protein_579 helix-turn-helix domain-containing protein -
  Q7624_RS02945 (Q7624_02950) HI0659 555132..555398 (+) 267 WP_001814186.1 helix-turn-helix transcriptional regulator Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9641.11 Da        Isoelectric Point: 4.2720

>NTDB_id=864023 Q7624_RS02945 WP_001814186.1 555132..555398(+) (HI0659) [Streptococcus pneumoniae strain 2016S11-245]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=864023 Q7624_RS02945 WP_001814186.1 555132..555398(+) (HI0659) [Streptococcus pneumoniae strain 2016S11-245]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A654WS02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489