Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   Q7626_RS02345 Genome accession   NZ_CP131707
Coordinates   470497..471228 (+) Length   243 a.a.
NCBI ID   WP_000889957.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2018C08-270     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 465497..476228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7626_RS02315 (Q7626_02310) dnaK 465766..467589 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  Q7626_RS02320 (Q7626_02315) - 467600..468004 (+) 405 WP_000343113.1 hypothetical protein -
  Q7626_RS02325 (Q7626_02320) dnaJ 468219..469355 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  Q7626_RS02330 (Q7626_02325) - 469384..469560 (-) 177 WP_014931964.1 hypothetical protein -
  Q7626_RS02335 (Q7626_02330) - 469722..470009 (-) 288 WP_000777753.1 hypothetical protein -
  Q7626_RS02340 (Q7626_02335) - 470019..470429 (-) 411 WP_001278301.1 HIT family protein -
  Q7626_RS02345 (Q7626_02340) pptA 470497..471228 (+) 732 WP_000889957.1 ABC transporter ATP-binding protein Regulator
  Q7626_RS02350 (Q7626_02345) - 471225..472274 (+) 1050 WP_000653771.1 ABC transporter permease -
  Q7626_RS02355 (Q7626_02350) - 472442..472771 (-) 330 WP_000132572.1 hypothetical protein -
  Q7626_RS02360 (Q7626_02355) - 473048..473386 (+) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  Q7626_RS02365 (Q7626_02360) comE/blpR 473391..474128 (+) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  Q7626_RS02370 (Q7626_02365) - 474142..475482 (+) 1341 WP_001017636.1 sensor histidine kinase -
  Q7626_RS02375 (Q7626_02370) blpC 475553..475681 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27158.63 Da        Isoelectric Point: 4.7044

>NTDB_id=863867 Q7626_RS02345 WP_000889957.1 470497..471228(+) (pptA) [Streptococcus pneumoniae strain 2018C08-270]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVTFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=863867 Q7626_RS02345 WP_000889957.1 470497..471228(+) (pptA) [Streptococcus pneumoniae strain 2018C08-270]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACCGTTGAAAGTGG
GCAGCTGGTTGGTTTGATTGGTCTCAATGGTGCTGGTAAATCGACGACCATTAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGTTCCATCAATATTAATGGCTTGACCCTGCAAGAAGATGCAACGAGCTACCGCAAGCAAATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACTCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGACTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712