Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   WDR08_RS15410 Genome accession   NZ_CP148035
Coordinates   3209471..3209995 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3204471..3214995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR08_RS15390 (WDR08_15390) - 3204538..3207009 (-) 2472 WP_031756300.1 penicillin-binding protein 1A -
  WDR08_RS15395 (WDR08_15395) pilM 3207194..3208258 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  WDR08_RS15400 (WDR08_15400) pilN 3208258..3208854 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  WDR08_RS15405 (WDR08_15405) pilO 3208851..3209474 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  WDR08_RS15410 (WDR08_15410) comL/pilP 3209471..3209995 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  WDR08_RS15415 (WDR08_15415) pilQ 3210049..3212193 (+) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  WDR08_RS15420 (WDR08_15420) aroK 3212205..3212723 (+) 519 WP_003095833.1 shikimate kinase AroK -
  WDR08_RS15425 (WDR08_15425) aroB 3212773..3213879 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=863757 WDR08_RS15410 WP_003095836.1 3209471..3209995(+) (comL/pilP) [Pseudomonas aeruginosa strain S1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=863757 WDR08_RS15410 WP_003095836.1 3209471..3209995(+) (comL/pilP) [Pseudomonas aeruginosa strain S1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACTATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362