Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   WDR08_RS15400 Genome accession   NZ_CP148035
Coordinates   3208258..3208854 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3203258..3213854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR08_RS15390 (WDR08_15390) - 3204538..3207009 (-) 2472 WP_031756300.1 penicillin-binding protein 1A -
  WDR08_RS15395 (WDR08_15395) pilM 3207194..3208258 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  WDR08_RS15400 (WDR08_15400) pilN 3208258..3208854 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  WDR08_RS15405 (WDR08_15405) pilO 3208851..3209474 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  WDR08_RS15410 (WDR08_15410) comL/pilP 3209471..3209995 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  WDR08_RS15415 (WDR08_15415) pilQ 3210049..3212193 (+) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  WDR08_RS15420 (WDR08_15420) aroK 3212205..3212723 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=863755 WDR08_RS15400 WP_003095839.1 3208258..3208854(+) (pilN) [Pseudomonas aeruginosa strain S1]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=863755 WDR08_RS15400 WP_003095839.1 3208258..3208854(+) (pilN) [Pseudomonas aeruginosa strain S1]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCACTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369