Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   WDR08_RS09925 Genome accession   NZ_CP148035
Coordinates   2035891..2036256 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain S1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2030891..2041256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR08_RS09910 (WDR08_09910) pilK 2032235..2033110 (-) 876 WP_031757002.1 type 4 fimbrial methyltransferase PilK -
  WDR08_RS09915 (WDR08_09915) pilJ 2033171..2035219 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  WDR08_RS09920 (WDR08_09920) - 2035304..2035840 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  WDR08_RS09925 (WDR08_09925) pilH 2035891..2036256 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  WDR08_RS09930 (WDR08_09930) pilG 2036303..2036710 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  WDR08_RS09935 (WDR08_09935) gshB 2036965..2037918 (+) 954 WP_003100943.1 glutathione synthase -
  WDR08_RS09940 (WDR08_09940) - 2038065..2038958 (+) 894 WP_003162015.1 energy transducer TonB -
  WDR08_RS09945 (WDR08_09945) - 2039007..2039576 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  WDR08_RS09950 (WDR08_09950) ruvX 2039576..2040010 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  WDR08_RS09955 (WDR08_09955) pyrR 2040122..2040634 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=863728 WDR08_RS09925 WP_003084587.1 2035891..2036256(-) (pilH) [Pseudomonas aeruginosa strain S1]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=863728 WDR08_RS09925 WP_003084587.1 2035891..2036256(-) (pilH) [Pseudomonas aeruginosa strain S1]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364