Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAC27_RS17570 Genome accession   NZ_CP148034
Coordinates   3580744..3581373 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain NH-21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3575744..3586373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAC27_RS17550 (WAC27_17550) matP 3577315..3577767 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WAC27_RS17555 (WAC27_17555) ompA 3577843..3578883 (-) 1041 WP_000750416.1 porin OmpA -
  WAC27_RS17560 (WAC27_17560) sulA 3579240..3579749 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WAC27_RS17570 (WAC27_17570) sxy/tfoX 3580744..3581373 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WAC27_RS17575 (WAC27_17575) yccS 3581336..3583498 (-) 2163 WP_000875061.1 YccS family putative transporter -
  WAC27_RS17580 (WAC27_17580) yccF 3583508..3583954 (-) 447 WP_001261235.1 YccF domain-containing protein -
  WAC27_RS17585 (WAC27_17585) helD 3584077..3586131 (+) 2055 WP_338850754.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=863690 WAC27_RS17570 WP_000839153.1 3580744..3581373(+) (sxy/tfoX) [Escherichia coli strain NH-21]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=863690 WAC27_RS17570 WP_000839153.1 3580744..3581373(+) (sxy/tfoX) [Escherichia coli strain NH-21]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1