Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WGK59_RS02200 Genome accession   NZ_CP148002
Coordinates   435895..436548 (-) Length   217 a.a.
NCBI ID   WP_080006072.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2427     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 430895..441548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK59_RS02200 (WGK59_02200) sxy/tfoX 435895..436548 (-) 654 WP_080006072.1 DNA transformation protein TfoX Regulator
  WGK59_RS02205 (WGK59_02205) recA 436868..437932 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  WGK59_RS02210 (WGK59_02210) recX 438012..438470 (+) 459 WP_041175045.1 recombination regulator RecX -
  WGK59_RS02215 (WGK59_02215) crcB 438467..438853 (-) 387 WP_005692779.1 fluoride efflux transporter CrcB -
  WGK59_RS02220 (WGK59_02220) - 438853..439671 (-) 819 WP_015701756.1 Cof-type HAD-IIB family hydrolase -
  WGK59_RS02225 (WGK59_02225) - 440074..441078 (+) 1005 WP_015701755.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25015.36 Da        Isoelectric Point: 10.0305

>NTDB_id=863577 WGK59_RS02200 WP_080006072.1 435895..436548(-) (sxy/tfoX) [Haemophilus influenzae strain AR2427]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLNGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=863577 WGK59_RS02200 WP_080006072.1 435895..436548(-) (sxy/tfoX) [Haemophilus influenzae strain AR2427]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGCGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAACGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

98.618

100

0.986