Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   WGK59_RS01385 Genome accession   NZ_CP148002
Coordinates   276082..277941 (-) Length   619 a.a.
NCBI ID   WP_015701827.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2427     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 271082..282941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK59_RS01375 (WGK59_01375) lptD 271843..274191 (+) 2349 WP_112072245.1 LPS assembly protein LptD -
  WGK59_RS01380 (WGK59_01380) proS 274279..275997 (-) 1719 WP_015701828.1 proline--tRNA ligase -
  WGK59_RS01385 (WGK59_01385) recQ 276082..277941 (-) 1860 WP_015701827.1 DNA helicase RecQ Machinery gene
  WGK59_RS01390 (WGK59_01390) cyaY 277943..278248 (-) 306 WP_005655473.1 iron donor protein CyaY -
  WGK59_RS01395 (WGK59_01395) lptM 278346..278462 (+) 117 WP_005652274.1 LPS translocon maturation chaperone LptM -
  WGK59_RS01400 (WGK59_01400) lysA 278510..279757 (+) 1248 WP_015701826.1 diaminopimelate decarboxylase -
  WGK59_RS01405 (WGK59_01405) - 279963..280589 (+) 627 WP_005652269.1 response regulator -
  WGK59_RS01410 (WGK59_01410) - 280651..281091 (-) 441 WP_015701825.1 DUF2489 domain-containing protein -
  WGK59_RS01415 (WGK59_01415) yihI 281095..281655 (-) 561 WP_005648548.1 Der GTPase-activating protein YihI -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 70059.47 Da        Isoelectric Point: 8.0144

>NTDB_id=863571 WGK59_RS01385 WP_015701827.1 276082..277941(-) (recQ) [Haemophilus influenzae strain AR2427]
MLDSPLPSKIIEKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLTLVISPLISL
MKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQLKLLYVSPEKVMTNSFFQLISYSKVCFIAIDEAHCISQWGHD
FRPEYTQLGGLKASFPDAPIMALTATADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQKGK
SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFGMGINKSNVRFVAHFDLPRSI
ESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILFEKPETPQRQIEQHKLEAIGEFAESQTCRRLVLLNYFGEHRQTPC
NNCDICLDPPKKYDGLVDAQKVMSTIYRVGQCFGAHYVIAVLRGMHNQKIVERQHHKLSVYGIGKDKSKEHWQSVIRQLI
HLGFVQQVISELNPTLQLTESAKVILKGEEPLELAMPRISAISKIAHNPQRQGVANYDKDLFARLRFLRKQIADKENIPP
YIVFNDATLQEMAQYMPTSNIEMLQINGVGSIKLERFGQPFMALIQEHKAILANAQNND

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=863571 WGK59_RS01385 WP_015701827.1 276082..277941(-) (recQ) [Haemophilus influenzae strain AR2427]
ATGCTGGATTCTCCTTTACCATCAAAAATAATAGAAAAACCGACCGCACTTTCTGTTTTGAAATCGGTTTTCGGTTATCA
ATCTTTCCGTAAAGGGCAGGAAGAAGTTATTAATGCTGCTTTAAATGGACAAGATGCGTTGGTGGTAATGGCAACGGGGA
ATGGCAAATCGCTTTGTTACCAAATTCCCGCACTTTGTTTTGATGGTTTAACTTTAGTGATTTCTCCGCTGATTTCCTTG
ATGAAAGATCAAGTGGATCAGCTGCAAGCTAATGGAATTGAGGCGGATTTTCTTAATTCTAGTCAGACTTTAGAACAGCA
GCAACAAGTACAAAATAAGCTTATTTCTGGGCAACTTAAACTACTTTATGTGTCGCCAGAAAAAGTGATGACGAACAGTT
TCTTTCAACTTATTTCTTATAGCAAAGTCTGCTTTATTGCGATTGATGAAGCACATTGTATTTCTCAATGGGGGCATGAC
TTTCGCCCTGAATATACCCAGCTTGGCGGTTTAAAAGCCAGTTTCCCTGATGCGCCGATTATGGCACTTACGGCAACGGC
AGATTATGCGACTCAACAAGATATTCTGCGGCATCTTAATCTGAAAAATCTGCACAAATACATTGGTAGTTTTGATCGAC
CAAATATTCGTTATACCTTGGAAGAAAAATACAAACCAATGGAACAACTGACACGTTTTGTGTTGGCTCAAAAGGGCAAA
AGTGGGATTATTTATTGCAACAGCAGAAATAAGGTTGAGCGAATTGCGGAAAGTTTACGCAATAAAGGTGTCTCTGCTGC
TGCTTACCACGCAGGAATGGAAACGGCAATTCGTGAACGTGTGCAACAGGATTTTCAGCGTGATAATGTTCAAGTAGTAG
TCGCAACCATTGCTTTTGGAATGGGGATTAATAAATCCAATGTGCGCTTTGTTGCCCATTTTGATTTACCACGTAGCATT
GAATCTTACTATCAAGAAACAGGTCGAGCAGGACGTGATGATTTGCCTGCCGAGGCGGTTTTGTTTTATGAACCAGCTGA
TTACGCTTGGTTACAAAAAATTCTCTTCGAAAAACCAGAAACGCCACAGCGTCAGATTGAGCAACATAAATTAGAAGCTA
TTGGGGAATTTGCGGAAAGCCAGACTTGTCGCCGTTTAGTTCTTCTCAATTATTTTGGCGAGCATCGACAAACACCATGC
AATAACTGTGATATTTGCCTTGATCCTCCTAAAAAATATGATGGTTTAGTCGATGCGCAAAAAGTAATGTCTACTATTTA
TCGAGTGGGGCAATGTTTTGGTGCACATTATGTGATTGCGGTGCTGCGTGGCATGCACAATCAGAAAATTGTTGAACGCC
AACACCATAAACTTTCAGTATATGGCATTGGAAAAGATAAAAGTAAAGAGCATTGGCAGTCTGTCATTCGTCAGCTTATT
CATTTGGGTTTTGTGCAACAGGTTATTAGTGAATTAAATCCAACGTTGCAACTTACTGAAAGTGCGAAAGTGATTTTGAA
AGGCGAAGAACCGTTAGAATTGGCAATGCCTCGTATTTCTGCAATCAGTAAAATTGCTCATAATCCACAACGTCAAGGTG
TTGCAAATTACGATAAGGATTTATTTGCACGCTTGCGTTTCTTACGCAAACAAATTGCCGATAAAGAAAATATTCCGCCG
TACATTGTCTTTAATGATGCGACGTTGCAAGAAATGGCACAATATATGCCAACAAGCAATATTGAAATGTTGCAAATTAA
TGGCGTGGGCTCTATCAAATTAGAGCGGTTTGGGCAGCCGTTTATGGCATTGATTCAAGAACATAAGGCAATTTTGGCGA
ATGCGCAAAATAATGACTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(539-605)

RecQ zinc-binding (RecQ_Zn_bind)

(347-407)

DEAD/DEAH box helicase (DEAD)

(32-191)

RQC domain (RQC)

(409-518)

Helicase conserved C-terminal domain (Helicase_C)

(228-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.43

96.284

0.38