Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AABK26_RS01905 Genome accession   NZ_AP027487
Coordinates   415473..416150 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain LR-21-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410473..421150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK26_RS01890 (VEE05_03700) chiA 411840..414533 (+) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -
  AABK26_RS01895 (VEE05_03710) bfd 414702..414896 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  AABK26_RS01900 (VEE05_03720) bfr 414968..415444 (+) 477 WP_000675504.1 bacterioferritin -
  AABK26_RS01905 (VEE05_03730) pilD 415473..416150 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  AABK26_RS01910 (VEE05_03740) gspM 416150..416611 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  AABK26_RS01915 (VEE05_03750) gspL 416608..417771 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  AABK26_RS01920 (VEE05_03760) gspK 417786..418769 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  AABK26_RS01925 (VEE05_03770) gspJ 418762..419349 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  AABK26_RS01930 (VEE05_03780) gspI 419342..419719 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  AABK26_RS01935 (VEE05_03790) gspH 419716..420225 (-) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  AABK26_RS01940 (VEE05_03800) gspG 420233..420670 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=86356 AABK26_RS01905 WP_000178161.1 415473..416150(-) (pilD) [Escherichia coli strain LR-21-1]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=86356 AABK26_RS01905 WP_000178161.1 415473..416150(-) (pilD) [Escherichia coli strain LR-21-1]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378

Multiple sequence alignment