Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   WGK56_RS09295 Genome accession   NZ_CP148001
Coordinates   1862629..1863855 (+) Length   408 a.a.
NCBI ID   WP_061659661.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2632     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1857629..1868855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK56_RS09285 (WGK56_09275) - 1858580..1860427 (+) 1848 WP_015702013.1 capsular polysaccharide synthesis protein -
  WGK56_RS09290 (WGK56_09280) - 1860534..1862576 (+) 2043 WP_015702012.1 capsular polysaccharide biosynthesis protein -
  WGK56_RS09295 (WGK56_09285) kpsS 1862629..1863855 (+) 1227 WP_061659661.1 capsule biosynthesis protein Regulator
  WGK56_RS09300 (WGK56_09290) - 1863856..1864095 (-) 240 WP_005628693.1 IS3 family transposase -
  WGK56_RS09305 (WGK56_09295) - 1864299..1864664 (-) 366 WP_015702010.1 IS3 family transposase -
  WGK56_RS09310 (WGK56_09300) - 1864661..1865035 (-) 375 WP_015702009.1 transposase -
  WGK56_RS09315 (WGK56_09305) - 1865410..1866061 (+) 652 Protein_1781 IS1595 family transposase -
  WGK56_RS09320 (WGK56_09310) - 1866130..1866810 (-) 681 WP_172451698.1 MIP/aquaporin family protein -
  WGK56_RS09325 (WGK56_09315) - 1866900..1867502 (-) 603 Protein_1783 cyclase family protein -

Sequence


Protein


Download         Length: 408 a.a.        Molecular weight: 47436.48 Da        Isoelectric Point: 9.4781

>NTDB_id=863558 WGK56_RS09295 WP_061659661.1 1862629..1863855(+) (kpsS) [Haemophilus influenzae strain AR2632]
MNHYLDELVQSSKRILLLQGPIGHFFTDLSAWLVGQGKTVYKINFNGGDEHFYPSSIENTIAYRGSVSEFYPYLQLFCKQ
HNIDAMVCFGDNRRYHKIAKKISQDEQIPFWVFEEGYFRPDYVTLEKQGVNAFSPLPRQADFYLEQAENLPEPAIPLKLA
KGFLPMAKVAIAYYTKVYFGRDNYPKYQHHRILNLKYYIKLWVTSGIKRACYYLRDRTFARKVNRGKLGDFFVVPLQVYD
DSQVKVHCDFNSVGAFLREVLQSFAESAPNNLNLVIKHHPMDRGFIHYDPVIQEFENRYPHLKGRLFYVHDMPLPVLLRR
GKGMVTLNSTSGISALLHGMPVITLGRANYHFEGLTHQGDLSSFWQNPTKPDPFVFEAYRKYHLNKTMINGSFYNRVIID
LPPKSWTG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=863558 WGK56_RS09295 WP_061659661.1 1862629..1863855(+) (kpsS) [Haemophilus influenzae strain AR2632]
ATGAACCACTATTTAGATGAATTAGTCCAAAGTTCGAAACGGATTTTACTTTTGCAAGGACCAATCGGCCACTTTTTTAC
CGATCTTTCAGCTTGGTTAGTGGGACAAGGAAAAACCGTTTATAAAATCAATTTTAACGGTGGCGATGAACATTTTTATC
CGTCATCGATTGAAAACACGATTGCTTATCGTGGCTCAGTGAGTGAGTTCTACCCTTACCTGCAACTATTTTGCAAACAA
CACAATATTGATGCGATGGTTTGCTTTGGTGACAACCGTAGATACCACAAAATCGCAAAAAAAATATCACAAGATGAACA
GATTCCATTTTGGGTGTTTGAAGAAGGCTATTTCCGTCCTGATTACGTGACACTCGAAAAACAAGGGGTAAATGCGTTCT
CCCCTCTTCCTCGCCAAGCAGATTTCTATCTTGAGCAAGCCGAAAATTTACCTGAGCCAGCTATACCACTTAAATTAGCC
AAAGGTTTTTTACCGATGGCAAAAGTGGCAATCGCTTATTACACTAAAGTTTACTTTGGGCGAGATAATTACCCGAAATA
CCAACACCACCGCATTCTGAATCTGAAATACTATATAAAACTATGGGTTACATCAGGCATCAAGCGTGCTTGTTATTACT
TGCGTGATCGTACCTTTGCAAGAAAAGTCAACCGTGGGAAATTAGGTGATTTCTTTGTTGTGCCATTGCAAGTTTATGAT
GACAGCCAAGTGAAAGTACATTGTGATTTCAACAGTGTCGGCGCATTCTTGCGTGAAGTATTGCAATCTTTTGCTGAATC
AGCACCAAACAATCTCAATCTAGTCATTAAGCATCACCCAATGGATCGGGGTTTTATTCATTATGATCCTGTTATTCAAG
AATTTGAAAACCGTTATCCGCACTTAAAAGGGCGACTATTCTATGTGCATGATATGCCATTGCCCGTTCTGCTTCGTCGC
GGTAAAGGCATGGTAACGCTGAATAGCACGAGTGGTATTTCTGCCTTATTACATGGTATGCCTGTCATCACACTTGGACG
AGCCAATTATCATTTTGAAGGGCTTACACACCAAGGTGACTTATCCTCATTTTGGCAAAACCCTACTAAGCCCGATCCAT
TCGTTTTTGAGGCTTACCGCAAATATCATCTGAATAAAACCATGATTAATGGTAGTTTTTATAATCGAGTGATTATTGAT
CTGCCCCCTAAAAGTTGGACAGGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.422

96.324

0.37