Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   WGK56_RS03715 Genome accession   NZ_CP148001
Coordinates   726080..726694 (+) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2632     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 721080..731694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK56_RS03690 (WGK56_03680) - 721648..722166 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  WGK56_RS03695 (WGK56_03685) aspS 722385..724151 (+) 1767 WP_015701571.1 aspartate--tRNA ligase -
  WGK56_RS03700 (WGK56_03690) nudB 724173..724646 (+) 474 WP_015701570.1 dihydroneopterin triphosphate diphosphatase -
  WGK56_RS03705 (WGK56_03695) - 724658..725398 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  WGK56_RS03710 (WGK56_03700) ruvC 725445..726017 (+) 573 WP_061659669.1 crossover junction endodeoxyribonuclease RuvC -
  WGK56_RS03715 (WGK56_03705) ruvA 726080..726694 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  WGK56_RS03720 (WGK56_03710) ruvB 726702..727709 (+) 1008 WP_015701568.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  WGK56_RS03725 (WGK56_03715) - 727761..728048 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  WGK56_RS03730 (WGK56_03720) xerD 728221..729114 (-) 894 WP_005636429.1 site-specific tyrosine recombinase XerD -
  WGK56_RS03735 (WGK56_03725) - 729145..730311 (-) 1167 WP_015701567.1 3-phenylpropionate MFS transporter -
  WGK56_RS03740 (WGK56_03730) proC 730311..731126 (-) 816 WP_015701566.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=863529 WGK56_RS03715 WP_005659994.1 726080..726694(+) (ruvA) [Haemophilus influenzae strain AR2632]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=863529 WGK56_RS03715 WP_005659994.1 726080..726694(+) (ruvA) [Haemophilus influenzae strain AR2632]
ATGATTGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTTGGGCCTAAATTAGCCCTAGCGATTTTATCTGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373