Detailed information NTG0863453

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: WAE38_RS04850
• Genome accession: NZ_CP147984
• Coordinates: 907907..910480 (-)
• Length: 857 a.a.
• NCBI ID: WP_338824910.1
• Uniprot ID: -
• Organism: Glaesserella parasuis strain H16SD2BY4
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 902907..915480

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WAE38_RS04835 (WAE38_04835)	hxpB	903401..904048 (+)	648	WP_279429352.1	hexitol phosphatase HxpB	-
WAE38_RS04840 (WAE38_04840)	polA	904195..907059 (+)	2865	WP_207342856.1	DNA polymerase I	-
WAE38_RS04845 (WAE38_04845)	-	907127..907789 (-)	663	WP_035494262.1	Bax inhibitor-1 family protein	-
WAE38_RS04850 (WAE38_04850)	clpC	907907..910480 (-)	2574	WP_338824910.1	ATP-dependent chaperone ClpB	Regulator
WAE38_RS04855 (WAE38_04855)	dsbC	910784..911467 (-)	684	WP_021112250.1	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	-
WAE38_RS04860 (WAE38_04860)	mepM	911479..912900 (-)	1422	WP_035495712.1	murein DD-endopeptidase MepM	-
WAE38_RS04865 (WAE38_04865)	znuC	913107..913892 (+)	786	WP_021112231.1	zinc ABC transporter ATP-binding protein ZnuC	-
WAE38_RS04870 (WAE38_04870)	znuB	913903..914688 (+)	786	WP_021110568.1	zinc ABC transporter permease subunit ZnuB	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95861.22 Da
• Isoelectric Point: 5.1563

>NTDB_id=863453 WAE38_RS04850 WP_338824910.1 907907..910480(-) (clpC) [Glaesserella parasuis strain H16SD2BY4]
MNIDKFTSKFQSAIADAQSLAVGKDNPYIEPAHLMLALLKQNDGSITPLVTSLNVQPNRLSSELDGIISRLPQVQGGNTQ
PSQQLFRLLNQCDKLSQQFGDSFISSELFVLAALEDNGDLGKLLKNLGLTKEKVTAAIQQIRGGESVNNQNAEETRQALQ
KYTIDLTERAKVGKLDPVIGRDEEIRRTVQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSLDM
GALIAGAKYRGEFEERLKAVLNELAKEEGKVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQY
IEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSLR
MEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEDLTAREREYAELEEVWKAEKSALLGTQHIKTELENA
RIEMDQARRENNFEKMSELQYGKIPALEKQLQEAVKREEEGGENHLLRTKVTDEEIAEVLSKATGIPVSKMMEGEKEKLL
RMEEVLHKRVIGQSEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDDQDAMVRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSHLIQENADNMSYDEMKTIVMNVVGQHFRPEFINRIDETVVFHPLDKENIRAIARIQLERLIKRMAERGYEVTVTDAAV
DHIGEAGFDPLFGARPLKRAIQQELENTLAQQILSGKLLPNSPVTVDYQEGRVVAVQ

Nucleotide

• Length: 2574 bp

>NTDB_id=863453 WAE38_RS04850 WP_338824910.1 907907..910480(-) (clpC) [Glaesserella parasuis strain H16SD2BY4]
ATGAATATTGATAAATTTACCAGCAAGTTTCAATCAGCAATTGCCGATGCACAATCTTTAGCCGTTGGCAAAGATAATCC
CTATATTGAACCGGCCCATTTAATGCTTGCCTTGTTAAAGCAAAATGATGGATCAATCACACCGCTTGTCACCAGTTTAA
ATGTGCAACCTAACCGTTTAAGCAGTGAACTTGATGGCATCATCAGCCGTTTGCCACAGGTGCAAGGGGGCAATACACAG
CCGTCACAACAACTTTTCCGTTTGTTAAATCAATGCGATAAATTGTCGCAACAGTTTGGTGATAGCTTTATTTCATCAGA
GCTATTTGTGCTTGCGGCACTTGAAGATAATGGTGATTTAGGCAAGTTATTGAAAAACTTAGGTTTAACCAAAGAGAAAG
TGACAGCCGCTATTCAACAAATTCGTGGAGGGGAGAGCGTGAATAATCAAAATGCAGAAGAAACGAGACAAGCGTTACAA
AAATATACCATTGATTTAACCGAGCGAGCTAAGGTAGGCAAACTTGATCCTGTGATTGGACGTGATGAAGAGATCCGCCG
TACAGTGCAAGTATTGCAACGCCGTACTAAAAATAATCCAGTGCTTATCGGTGAACCAGGTGTGGGGAAAACGGCGATTG
TCGAAGGTTTAGCACAGCGTATCGTCAATGGCGAAGTGCCTGAAGGTCTAAAAAACAAACGTGTACTTTCCTTAGATATG
GGGGCTTTGATTGCAGGAGCAAAATACCGCGGTGAGTTTGAAGAGCGTTTGAAAGCGGTATTGAATGAGCTTGCTAAAGA
AGAAGGGAAAGTGATCCTGTTTATTGATGAAATTCATACGATGGTCGGTGCAGGTAAAACCGATGGAGCGATGGACGCAG
GTAACTTGTTGAAACCGTCCCTTGCTCGTGGCGAGTTGCATTGTGTCGGGGCGACAACCTTAGATGAATATCGTCAATAT
ATTGAAAAAGATGCGGCTCTGGAGCGTCGTTTCCAAAAAGTGTTGGTTGATGAGCCGACGGTTGAAGATACCATTGCGAT
TTTGCGTGGTTTGAAAGAACGCTACGAAATTCACCACCACGTTCAAATTACGGATCCTGCAATTGTCGCAGCTGCAACCC
TTTCACATCGCTATATTTCCGATCGTCAGTTACCCGATAAAGCGATTGACTTAATTGATGAAGCAGCGTCGAGCTTGCGT
ATGGAAATCGACTCTAAACCAGAGCCGTTAGACAAACTTGAACGCCGTATTATTCAGTTGAAATTAGAGCGTCAAGCGTT
GCAAAAAGAAGAAGACGAAGCTAGCCGTCAGCGTCTTGCAAAATTAGACGAGGATCTGACCGCTCGTGAACGTGAATATG
CAGAGCTGGAAGAAGTATGGAAAGCAGAAAAGTCCGCCCTATTAGGCACGCAACACATTAAAACCGAGTTGGAAAATGCC
CGAATTGAAATGGATCAGGCTCGTCGTGAGAATAACTTTGAGAAAATGTCGGAGTTGCAATACGGAAAAATCCCAGCCCT
TGAAAAACAGTTGCAAGAAGCGGTAAAACGTGAAGAAGAAGGCGGTGAAAATCATCTGCTTCGCACCAAAGTGACCGATG
AAGAAATTGCCGAAGTGCTTTCTAAAGCCACAGGTATCCCTGTATCCAAAATGATGGAAGGGGAAAAAGAGAAACTATTA
CGAATGGAAGAGGTGCTACATAAACGGGTCATCGGTCAAAGTGAAGCCGTTGATGCAGTGGCAAATGCGATCCGTCGTAG
TCGTGCAGGCTTGTCTGATCCAAATCGCCCTATCGGTTCATTCCTATTCTTAGGACCGACAGGCGTAGGGAAAACAGAGC
TTTGCAAAACATTAGCCAACTTCCTATTTGACGACCAAGATGCGATGGTGCGGATCGATATGTCCGAATTTATGGAAAAA
CACAGCGTATCTCGCTTAGTTGGCGCACCTCCAGGATATGTCGGCTATGAAGAAGGCGGATATTTGACTGAAGCGGTTCG
CCGTCGTCCATATTCGGTTGTGTTGCTCGATGAAGTAGAAAAAGCACACCCAGATGTATTCAACATTTTATTGCAGGTGC
TTGATGATGGTCGTTTAACTGACGGACAAGGTCGTACGGTAGATTTCCGTAATACGGTCGTAATTATGACATCAAACTTA
GGTTCGCATTTAATTCAAGAGAATGCGGACAATATGAGTTACGATGAAATGAAAACTATCGTAATGAATGTGGTTGGGCA
ACATTTCCGCCCTGAATTTATCAACCGTATTGATGAAACTGTGGTATTCCACCCATTAGATAAAGAAAATATCCGTGCGA
TTGCTAGAATTCAGCTTGAACGTTTAATTAAACGTATGGCGGAGCGTGGCTATGAAGTGACGGTGACAGATGCGGCAGTT
GATCATATCGGCGAAGCAGGCTTTGACCCACTCTTTGGGGCAAGACCGCTTAAACGTGCAATTCAGCAAGAGCTTGAAAA
CACCTTGGCACAGCAAATTCTCTCTGGCAAATTGTTGCCGAATAGTCCTGTGACAGTGGATTATCAAGAAGGAAGGGTTG
TGGCAGTTCAGTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (201-332)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-846)

• AAA lid domain (AAA_lid_9) (340-442)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-67)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (92-143)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	44.914	100	0.459
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.398	100	0.441