Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   WAB15_RS34000 Genome accession   NZ_CP147982
Coordinates   7651326..7653788 (+) Length   820 a.a.
NCBI ID   WP_407288593.1    Uniprot ID   A0ABZ2R245
Organism   Streptomyces sp. BP-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7646326..7658788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAB15_RS33985 (WAB15_33965) - 7647893..7648696 (-) 804 WP_399145149.1 alpha/beta fold hydrolase -
  WAB15_RS33990 (WAB15_33970) - 7648784..7649731 (-) 948 WP_407288591.1 aminoglycoside phosphotransferase family protein -
  WAB15_RS33995 (WAB15_33975) - 7649956..7651263 (+) 1308 WP_407288592.1 NAD(P)/FAD-dependent oxidoreductase -
  WAB15_RS34000 (WAB15_33980) uvrA 7651326..7653788 (+) 2463 WP_407288593.1 excinuclease ABC subunit UvrA Machinery gene
  WAB15_RS34005 (WAB15_33985) - 7653870..7654082 (+) 213 WP_399145153.1 EF-hand domain-containing protein -
  WAB15_RS34010 (WAB15_33990) - 7654712..7655302 (-) 591 WP_407288594.1 hypothetical protein -
  WAB15_RS34015 (WAB15_33995) - 7655542..7656105 (-) 564 WP_407288595.1 hypothetical protein -
  WAB15_RS34020 (WAB15_34000) - 7656930..7657406 (+) 477 WP_407288596.1 hypothetical protein -

Sequence

Protein


Download         Length: 820 a.a.        Molecular weight: 87419.88 Da        Isoelectric Point: 6.9222

>NTDB_id=863434 WAB15_RS34000 WP_407288593.1 7651326..7653788(+) (uvrA) [Streptomyces sp. BP-8]
MTDSYVRVRGAREHNLRTVDVDIPRDALVAFTGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARRLIHQVGAPKVEDITG
LPPAVALEQRRSAPTSRSSVGTVTTLSNTLRMLFSRAGDYPAGSTERLDSDAFSPNTAAGACPECHGLGTVHRVTEESLV
PDPALSIRDGAIAAWPGAWQGKNLRDILAALGHDIDRPWRELPRADRDWILFTEEQPVVTVHPVREAGRIQRPYKGQYMS
ARRYVLHTFGDSKSETLRKRVQGFMVAEPCPLCAGRRLRAEALAVTFEGRDIAALAGLPLSALAELLRPTAAGPDDQVAP
ALARDLVARIDVLTELGLGYLSMDRPAPTLSAGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLTVLGRLKEA
GNSLFVVEHDMDVVRRADWIVDVGPHAGEHGGQILHSGPVAALADVERSATRRFLFTAEPPPERTPRSPSGTLTLRGVTL
HNLRAVDAAFPLGVFTAVTGVSGSGKSTLVTRVLADAVRDHLGTGEEQPGDGGADGGDIGPTARAQLAGADGLDAVHRLV
RVDQKPIGRTPRSNLATYTGLFDAVRKVFAATDEARARGYTAGRFSFNVASGRCETCQGEGFVAVELLFLPGTYAPCTAC
HGARYHPETLEITYRDRTIADVLGMTVDAAADFLGDIPAAARSLRTLKDVGLGYLRLGQPATELSGGEAQRIKLATELQR
TRRGHTLYLLDEPTTGLHPADTEVLLRQLHGLVDAGHTVVVVEHDMGVVAGADHVIDLGPGGGADGGRIVATGTPAEVAA
APGSRTGPYLARRRGQPDAR

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=863434 WAB15_RS34000 WP_407288593.1 7651326..7653788(+) (uvrA) [Streptomyces sp. BP-8]
ATGACCGACTCGTACGTCCGGGTGCGCGGCGCCCGTGAGCACAACCTCCGCACCGTCGATGTGGACATCCCGAGGGACGC
CCTGGTCGCGTTCACCGGGGTGTCCGGATCGGGCAAGTCCTCCCTCGCCTTCGGCACCCTCTACGCCGAGGCGCAGCGCC
GCTACTTCGAGTCGGTGGCCCCCTACGCCCGGCGGCTGATCCACCAGGTCGGCGCGCCCAAGGTCGAGGACATCACCGGA
CTGCCGCCGGCCGTCGCGCTGGAGCAGCGGCGCTCCGCGCCCACCTCCCGCTCCTCGGTCGGTACCGTCACCACCCTCTC
CAACACCCTGCGGATGCTGTTCTCCCGCGCCGGCGACTATCCGGCCGGCAGCACCGAGCGGCTCGACTCCGACGCCTTCT
CGCCCAACACCGCGGCGGGCGCCTGTCCGGAGTGCCACGGCCTGGGCACCGTCCACCGGGTCACGGAGGAGTCGCTCGTC
CCCGACCCGGCGCTCTCCATCCGTGACGGCGCCATCGCCGCCTGGCCCGGCGCCTGGCAGGGCAAGAACCTCCGCGACAT
CCTCGCCGCCCTCGGCCACGACATCGACCGGCCCTGGCGGGAGCTGCCGCGGGCCGACCGCGACTGGATCCTGTTCACCG
AGGAGCAGCCCGTCGTCACCGTCCACCCGGTCCGTGAGGCGGGCCGTATCCAACGCCCCTACAAGGGCCAGTACATGAGC
GCCCGACGCTATGTGCTGCACACCTTCGGCGACTCCAAGAGCGAGACGCTGCGCAAGCGCGTCCAGGGCTTCATGGTCGC
CGAGCCCTGCCCGCTGTGCGCGGGGCGGCGGCTGCGCGCCGAGGCGCTGGCCGTCACCTTCGAGGGCCGGGACATCGCCG
CCCTCGCGGGCCTGCCGCTGAGCGCCCTCGCCGAGCTGCTGCGCCCCACCGCCGCGGGGCCGGACGACCAGGTGGCCCCG
GCGCTCGCCCGCGACCTGGTGGCCCGTATCGACGTGCTCACCGAACTCGGCCTCGGCTATCTGAGCATGGACCGGCCCGC
ACCCACCCTGTCCGCGGGCGAGCTGCAGCGGCTGCGGCTGGCCACCCAGCTGCGCTCCGGCCTCTTCGGCGTCGTCTACG
TCCTGGACGAGCCGTCCGCCGGGCTCCACCCCGCCGACACGGAGTCCCTGCTCACCGTGCTCGGCCGGCTCAAGGAGGCC
GGCAACTCGCTCTTCGTCGTCGAGCACGACATGGACGTGGTGCGGCGCGCCGACTGGATCGTGGACGTCGGCCCGCACGC
CGGGGAGCACGGCGGGCAGATCCTGCACAGCGGCCCGGTCGCCGCGCTCGCCGACGTCGAGCGGTCCGCCACCCGCCGCT
TCCTGTTCACCGCCGAACCGCCCCCCGAGCGCACCCCGCGCAGCCCCTCGGGCACCCTGACGCTGCGCGGCGTCACCCTG
CACAACCTGCGCGCAGTGGACGCCGCCTTCCCGCTCGGCGTCTTCACCGCCGTCACCGGCGTCTCCGGATCGGGCAAGTC
GACGTTGGTCACCCGGGTCCTCGCGGACGCGGTACGCGACCACCTGGGCACCGGCGAGGAGCAGCCGGGCGACGGCGGGG
CGGACGGCGGCGACATCGGGCCGACGGCCCGCGCCCAGCTCGCCGGCGCCGACGGCCTGGACGCGGTCCACCGGCTGGTG
CGCGTCGACCAGAAGCCCATCGGCCGTACCCCGCGCTCCAACCTCGCCACCTACACCGGGCTGTTCGACGCGGTACGCAA
GGTCTTCGCCGCCACCGACGAGGCCCGTGCCCGGGGCTACACCGCCGGGCGGTTCTCCTTCAACGTCGCCTCCGGCCGCT
GCGAGACCTGCCAGGGCGAGGGCTTCGTCGCCGTGGAGCTGCTCTTCCTGCCCGGTACGTACGCGCCGTGCACCGCCTGC
CACGGCGCGCGCTACCACCCCGAGACGCTGGAGATCACCTACCGGGACCGCACCATCGCCGACGTCCTGGGCATGACGGT
GGACGCCGCCGCCGACTTCCTCGGCGACATCCCGGCTGCCGCCCGCAGCCTGCGCACCCTCAAGGACGTCGGCCTGGGCT
ATCTGCGGCTGGGCCAGCCCGCGACCGAGCTGTCCGGCGGCGAGGCCCAGCGCATCAAGCTCGCCACCGAACTCCAGCGC
ACCCGCCGCGGCCACACCCTCTACCTCCTCGACGAGCCCACCACCGGGCTGCACCCCGCCGACACCGAGGTGCTGCTGCG
CCAGCTGCACGGCCTGGTCGACGCCGGGCACACCGTCGTGGTCGTCGAGCACGACATGGGGGTGGTCGCCGGGGCCGACC
ACGTCATCGACCTCGGGCCCGGTGGCGGCGCGGACGGCGGCCGGATCGTCGCCACCGGAACGCCCGCCGAGGTCGCGGCG
GCCCCCGGCAGCCGTACCGGCCCCTATCTGGCCCGGCGGAGGGGGCAGCCGGACGCACGTTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(157-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

41.795

86.951

0.363
  uvrA Streptococcus pneumoniae TIGR4

41.795

86.951

0.363
  uvrA Streptococcus pneumoniae D39

41.795

86.951

0.363