Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WAB15_RS24250 Genome accession   NZ_CP147982
Coordinates   5351024..5352925 (+) Length   633 a.a.
NCBI ID   WP_407289284.1    Uniprot ID   A0ABZ2QZ45
Organism   Streptomyces sp. BP-8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5346024..5357925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAB15_RS24225 - 5346281..5346388 (-) 108 WP_393488412.1 putative leader peptide -
  WAB15_RS24230 (WAB15_24200) - 5346615..5347313 (-) 699 WP_399148697.1 DUF2993 domain-containing protein -
  WAB15_RS24235 (WAB15_24205) - 5347542..5348714 (-) 1173 WP_407287524.1 hypothetical protein -
  WAB15_RS24240 (WAB15_24210) - 5348725..5348970 (-) 246 WP_393488526.1 MoaD/ThiS family protein -
  WAB15_RS24245 (WAB15_24215) rcrP 5349180..5350913 (+) 1734 WP_407287525.1 ABC transporter ATP-binding protein Regulator
  WAB15_RS24250 (WAB15_24220) rcrQ 5351024..5352925 (+) 1902 WP_407289284.1 ABC transporter ATP-binding protein Regulator
  WAB15_RS24255 (WAB15_24225) - 5353297..5353995 (+) 699 WP_399148694.1 DUF3800 domain-containing protein -
  WAB15_RS24260 (WAB15_24230) - 5354040..5356274 (+) 2235 WP_407287526.1 hypothetical protein -
  WAB15_RS24265 (WAB15_24235) - 5357037..5357894 (+) 858 WP_399148692.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 633 a.a.        Molecular weight: 67915.20 Da        Isoelectric Point: 5.9983

>NTDB_id=863411 WAB15_RS24250 WP_407289284.1 5351024..5352925(+) (rcrQ) [Streptomyces sp. BP-8]
MGGQPTEKSMDFKGSGKRLLAQMRPDGAVMSVALLLGVLSVALTVVGPKVLGHATDLIVSGVIGRGLPDGLSKAEAAARL
RADGQGGLADMLATMPVVPGHGIDFGAVGTVLLWVTVIYAAASLCGFVQARIATKVVQRTVFRMREQVEEKLARLPLSYF
DKQQRGEVLSRATNDIDNIQQTLQQTLSQIVASLLTILGVLAMMFWISWLLALVALITVPVSVVVATKVGKRAQPQFVQQ
WKTTGKLNAHVEEMYTGHSLVKVFGRQKESAEIFREQNEALYSAGFKAQFISGVIQPAMMFIGNLNYVLVAVVGGLRVAS
GSLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDAKEQEPDAALPDRPEHVAGRVEFEDVSFSYTAD
KPLIENLSLSVHPGQTVAIVGPTGAGKTTLVNLLMRFYEVRGGRITLDGVDIAAMSREDLRGHIGMVLQDTWLFGGTIAE
NIAYGAPAGTSMDKIVAAARATHVDRFVRTLPDGYDTVIDEEGGNVSVGEKQLITIARAFLAEPEILVLDEATSSVDTRT
EVLIQHAMAQLRTGRTSFVIAHRLSTIRDADTILVMEQGSIVEQGSHEALLAANGAYARLYAAQFAEAVAETG

Nucleotide


Download         Length: 1902 bp        

>NTDB_id=863411 WAB15_RS24250 WP_407289284.1 5351024..5352925(+) (rcrQ) [Streptomyces sp. BP-8]
ATGGGCGGCCAGCCCACCGAGAAGTCCATGGACTTCAAGGGCTCCGGCAAGCGCCTGCTCGCCCAGATGCGGCCCGATGG
CGCCGTGATGTCCGTCGCGCTGCTGCTCGGCGTGCTGAGCGTGGCGCTGACCGTCGTCGGCCCCAAGGTCCTCGGCCACG
CCACCGACCTGATCGTCTCCGGCGTCATCGGCCGCGGGCTGCCCGACGGGCTCTCCAAGGCCGAGGCCGCGGCCCGGCTG
CGCGCCGACGGGCAGGGCGGGCTGGCCGACATGCTCGCCACGATGCCGGTCGTCCCCGGCCACGGCATCGACTTCGGCGC
GGTCGGCACGGTCCTGCTCTGGGTCACCGTGATCTACGCCGCGGCGTCCCTGTGCGGCTTCGTCCAGGCCCGGATCGCCA
CCAAGGTCGTCCAGCGCACCGTCTTCCGGATGCGCGAGCAGGTCGAGGAGAAGCTCGCCCGGCTGCCGCTGAGCTACTTC
GACAAGCAGCAGCGCGGCGAGGTGCTCTCCCGCGCCACCAACGACATCGACAACATCCAGCAGACCCTGCAGCAGACCCT
CAGCCAGATCGTGGCCTCGCTGCTGACCATCCTCGGTGTGCTCGCCATGATGTTCTGGATCTCCTGGCTGCTGGCCCTGG
TCGCCCTGATCACGGTCCCGGTCTCGGTCGTCGTCGCCACCAAGGTCGGCAAGCGCGCCCAGCCGCAGTTCGTCCAGCAG
TGGAAGACCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGCCACAGCCTGGTGAAGGTCTTCGGCCGCCA
GAAGGAGTCCGCCGAGATCTTCCGCGAGCAGAACGAGGCGCTCTACTCCGCCGGCTTCAAGGCCCAGTTCATCTCCGGTG
TCATTCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTCCTGGTGGCCGTGGTCGGCGGTCTGCGGGTGGCGTCC
GGATCCCTGTCCATCGGCGACGTCCAGGCCTTCATCCAGTACTCCCGCCAGTTCAGCCAGCCGCTGACCCAGGTCGCCTC
GATGGCCAACCTCGTCCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAGCTGCTGGACGCCAAGGAGCAGGAGCCGG
ACGCGGCGCTGCCCGACCGGCCCGAACACGTGGCGGGCCGCGTCGAGTTCGAGGACGTGTCCTTCTCGTACACCGCGGAC
AAGCCGCTGATCGAGAACCTCTCGCTGTCCGTCCACCCCGGCCAGACGGTCGCCATCGTCGGCCCGACCGGCGCCGGCAA
GACCACCCTGGTCAACCTCCTGATGCGGTTCTACGAGGTCCGCGGCGGCCGGATCACCCTCGACGGGGTCGACATCGCGG
CGATGTCCCGCGAGGACCTGCGCGGCCACATCGGCATGGTCCTGCAGGACACCTGGCTCTTCGGCGGCACGATCGCGGAG
AACATCGCCTACGGCGCCCCCGCCGGCACCTCCATGGACAAGATCGTCGCCGCCGCGAGGGCCACCCACGTGGACCGCTT
CGTGCGCACCCTCCCCGACGGCTACGACACCGTCATCGACGAGGAGGGCGGCAACGTCTCGGTGGGCGAGAAGCAGCTGA
TCACCATCGCCCGCGCCTTCCTCGCCGAACCCGAGATCCTCGTCCTGGACGAGGCCACCAGCTCGGTCGACACCCGCACC
GAGGTCCTCATCCAGCACGCCATGGCCCAGCTCCGCACCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTGTCCACCAT
CCGCGACGCCGACACGATCCTGGTCATGGAGCAGGGCAGCATCGTCGAGCAGGGCTCGCACGAGGCGCTGCTGGCGGCCA
ACGGCGCCTACGCGCGGCTGTACGCGGCGCAGTTCGCCGAGGCGGTGGCCGAGACGGGGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(48-342)

ABC transporter (ABC_tran)

(405-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.318

98.262

0.406