Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   CPY3401_RS07110 Genome accession   NZ_AP024599
Coordinates   1470327..1471640 (-) Length   437 a.a.
NCBI ID   WP_221062442.1    Uniprot ID   -
Organism   Helicobacter pylori strain 3401     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1465327..1476640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY3401_RS07080 (CPY3401_14150) nadC 1465790..1466611 (-) 822 WP_221062440.1 carboxylating nicotinate-nucleotide diphosphorylase -
  CPY3401_RS07085 (CPY3401_14160) nadA 1466611..1467621 (-) 1011 WP_221062441.1 quinolinate synthase NadA -
  CPY3401_RS07090 (CPY3401_14170) - 1467611..1468414 (-) 804 WP_219029646.1 phosphatidylserine decarboxylase -
  CPY3401_RS07095 (CPY3401_14180) - 1468411..1468914 (-) 504 WP_000953085.1 DUF6115 domain-containing protein -
  CPY3401_RS07100 (CPY3401_14190) - 1468927..1469421 (-) 495 WP_001867294.1 hypothetical protein -
  CPY3401_RS07105 (CPY3401_14200) mqnP 1469414..1470256 (-) 843 WP_232501602.1 menaquinone biosynthesis prenyltransferase MqnP -
  CPY3401_RS07110 (CPY3401_14210) comEC/comE3 1470327..1471640 (-) 1314 WP_221062442.1 ComEC/Rec2 family competence protein Machinery gene
  CPY3401_RS07115 (CPY3401_14220) - 1471637..1473097 (-) 1461 WP_000349776.1 replicative DNA helicase -
  CPY3401_RS07120 (CPY3401_14230) - 1473108..1474502 (-) 1395 WP_221062443.1 NAD(P)H-hydrate dehydratase -
  CPY3401_RS07125 (CPY3401_14240) crdS 1474505..1475707 (-) 1203 WP_221062910.1 copper-sensing histidine kinase CrdS -
  CPY3401_RS07130 (CPY3401_14250) crdR 1475673..1476314 (-) 642 WP_001169802.1 copper response regulator transcription factor CrdR -
  CPY3401_RS07135 (CPY3401_14260) - 1476401..1476625 (-) 225 Protein_1394 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50318.25 Da        Isoelectric Point: 9.8898

>NTDB_id=86339 CPY3401_RS07110 WP_221062442.1 1470327..1471640(-) (comEC/comE3) [Helicobacter pylori strain 3401]
MKDKTFQGAFELLTTPKEYLLYGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGTHLFLT
ILSVRFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=86339 CPY3401_RS07110 WP_221062442.1 1470327..1471640(-) (comEC/comE3) [Helicobacter pylori strain 3401]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTATGGGGTTATTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCTTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGGAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCACATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGACGCATTTATTTTTAACG
ATTCTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947

Multiple sequence alignment