Detailed information NTG0086336

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ42_RS21840
• Genome accession: NZ_AP027479
• Coordinates: 4504179..4505204 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LR-17-1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4499179..4510204

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ42_RS21820 (VEE14_42000)	metJ	4500240..4500557 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
AABJ42_RS21825 (VEE14_42010)	yiiX	4500741..4501349 (+)	609	WP_121282494.1	YiiX family permuted papain-like enzyme	-
AABJ42_RS21830 (VEE14_42020)	rpmE	4501410..4501622 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ42_RS21835 (VEE14_42030)	priA	4501825..4504023 (+)	2199	WP_001424430.1	primosomal protein N'	Machinery gene
AABJ42_RS21840 (VEE14_42040)	cytR	4504179..4505204 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ42_RS21845 (VEE14_42050)	ftsN	4505296..4506255 (+)	960	WP_000068828.1	cell division protein FtsN	-
AABJ42_RS21850 (VEE14_42060)	hslV	4506348..4506878 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ42_RS21855 (VEE14_42070)	hslU	4506888..4508219 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AABJ42_RS21860 (VEE14_42080)	menA	4508286..4509212 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ42_RS21865 (VEE14_42090)	rraA	4509305..4509790 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ42_RS21870 (VEE14_42100)	zapB	4509875..4510120 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=86336 AABJ42_RS21840 WP_000644904.1 4504179..4505204(+) (cytR) [Escherichia coli strain LR-17-1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=86336 AABJ42_RS21840 WP_000644904.1 4504179..4505204(+) (cytR) [Escherichia coli strain LR-17-1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628