Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WFE12_RS16240 Genome accession   NZ_CP147877
Coordinates   3072811..3073521 (-) Length   236 a.a.
NCBI ID   WP_003229230.1    Uniprot ID   O34977
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067811..3078521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS16220 cysK 3067862..3068797 (+) 936 WP_003229237.1 cysteine synthase A -
  WFE12_RS16225 pepV 3068831..3070222 (-) 1392 WP_004399126.1 dipeptidase PepV -
  WFE12_RS16230 pbuO 3070319..3071617 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  WFE12_RS16235 ythQ 3071657..3072814 (-) 1158 WP_003229232.1 ABC transporter permease -
  WFE12_RS16240 pptA 3072811..3073521 (-) 711 WP_003229230.1 ABC transporter ATP-binding protein Regulator
  WFE12_RS16245 ytzE 3073812..3074033 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  WFE12_RS16250 rsuA 3074154..3074873 (-) 720 WP_003229226.1 pseudouridine synthase -
  WFE12_RS16255 murJ 3074942..3076576 (-) 1635 WP_003229224.1 lipid II flippase MurJ -
  WFE12_RS16260 ytfP 3076778..3078040 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26506.56 Da        Isoelectric Point: 5.3508

>NTDB_id=863338 WFE12_RS16240 WP_003229230.1 3072811..3073521(-) (pptA) [Bacillus subtilis subsp. subtilis str. 168]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDVQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=863338 WFE12_RS16240 WP_003229230.1 3072811..3073521(-) (pptA) [Bacillus subtilis subsp. subtilis str. 168]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTTCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTAGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATGTTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34977

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432