Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WFE12_RS08255 Genome accession   NZ_CP147877
Coordinates   1569835..1570284 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564835..1575284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS08215 ctaE 1564852..1565475 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  WFE12_RS08220 ctaF 1565478..1565810 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  WFE12_RS08225 ctaG 1565837..1566730 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  WFE12_RS08230 ylbA 1566762..1567124 (-) 363 WP_003232238.1 YugN family protein -
  WFE12_RS08235 ylbB 1567264..1567710 (+) 447 WP_003221362.1 CBS domain-containing protein -
  WFE12_RS08240 ylbC 1567794..1568834 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  WFE12_RS08245 ylbD 1569066..1569464 (+) 399 WP_003232233.1 YlbD family protein -
  WFE12_RS08250 ylbE 1569480..1569719 (+) 240 WP_003232231.1 YlbE-like family protein -
  WFE12_RS08255 ylbF 1569835..1570284 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WFE12_RS08260 ylbG 1570339..1570611 (+) 273 WP_009967171.1 YlbG family protein -
  WFE12_RS08265 rsmD 1570934..1571488 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WFE12_RS08270 coaD 1571493..1571978 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WFE12_RS08275 spoVV 1571989..1573215 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  WFE12_RS08280 ylbK 1573396..1574178 (+) 783 WP_003232221.1 patatin family protein -
  WFE12_RS08285 sepM 1574180..1575205 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=863280 WFE12_RS08255 WP_003221370.1 1569835..1570284(+) (ylbF) [Bacillus subtilis subsp. subtilis str. 168]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=863280 WFE12_RS08255 WP_003221370.1 1569835..1570284(+) (ylbF) [Bacillus subtilis subsp. subtilis str. 168]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1