Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WFE12_RS03905 Genome accession   NZ_CP147877
Coordinates   752376..753506 (+) Length   376 a.a.
NCBI ID   WP_003243267.1    Uniprot ID   Q59HN8
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 747376..758506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS03880 - 747678..747983 (-) 306 WP_003242885.1 hypothetical protein -
  WFE12_RS03885 yezA 748050..748256 (-) 207 WP_003233877.1 bacteriocin immunity protein -
  WFE12_RS03890 yezG 748496..748951 (-) 456 WP_010886434.1 TIGR01741 family protein -
  WFE12_RS03895 yeeF 748971..750980 (-) 2010 WP_003242909.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  WFE12_RS03900 - 751192..752214 (+) 1023 WP_003243884.1 hypothetical protein -
  WFE12_RS03905 rapC 752376..753506 (+) 1131 WP_003243267.1 response regulator aspartate phosphatase RapH Regulator
  WFE12_RS03910 phrH 753496..753669 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  WFE12_RS03915 yeeI 753829..754548 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  WFE12_RS03920 yeeK 754682..755119 (+) 438 WP_003244206.1 spore coat protein YeeK -
  WFE12_RS03925 yezE 755234..755818 (+) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  WFE12_RS03930 yesE 755897..756340 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  WFE12_RS03935 yesF 756337..757197 (+) 861 WP_003243852.1 NAD-dependent epimerase/dehydratase family protein -
  WFE12_RS03940 cotJA 757324..757572 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  WFE12_RS03945 cotJB 757556..757819 (+) 264 WP_003219491.1 spore coat protein CotJB -
  WFE12_RS03950 cotJC 757834..758403 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=863244 WFE12_RS03905 WP_003243267.1 752376..753506(+) (rapC) [Bacillus subtilis subsp. subtilis str. 168]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=863244 WFE12_RS03905 WP_003243267.1 752376..753506(+) (rapC) [Bacillus subtilis subsp. subtilis str. 168]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402