Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   WFE12_RS02440 Genome accession   NZ_CP147877
Coordinates   477478..477912 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472478..482912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS02410 ydaD 473128..473988 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  WFE12_RS02415 lyxE 474004..474507 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  WFE12_RS02420 ydaF 474593..475144 (+) 552 WP_003246691.1 GNAT family protein -
  WFE12_RS02425 ydaG 475222..475644 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  WFE12_RS02430 amj 476150..476959 (+) 810 WP_003234394.1 lipid II flippase Amj -
  WFE12_RS02435 ydzA 477003..477293 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  WFE12_RS02440 lrpC 477478..477912 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  WFE12_RS02445 topB 477977..480160 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  WFE12_RS02450 epsJ 480363..481451 (+) 1089 WP_003246551.1 lipoprotein -
  WFE12_RS02455 epsK 481432..482283 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=863235 WFE12_RS02440 WP_003246585.1 477478..477912(+) (lrpC) [Bacillus subtilis subsp. subtilis str. 168]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=863235 WFE12_RS02440 WP_003246585.1 477478..477912(+) (lrpC) [Bacillus subtilis subsp. subtilis str. 168]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1