Detailed information
Bioinformatically predicted
Overview
| Name | comH | Type | Machinery gene |
| Locus tag | CPY3401_RS00010 | Genome accession | NZ_AP024599 |
| Coordinates | 1689..3116 (+) | Length | 475 a.a. |
| NCBI ID | WP_221062500.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 3401 | ||
| Function | import of DNA into the periplasm (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1..8116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPY3401_RS00005 (CPY3401_00010) | dnaA | 101..1468 (+) | 1368 | WP_221062499.1 | chromosomal replication initiator protein DnaA | - |
| CPY3401_RS00010 (CPY3401_00020) | comH | 1689..3116 (+) | 1428 | WP_221062500.1 | competence protein | Machinery gene |
| CPY3401_RS00020 (CPY3401_00030) | - | 3294..4046 (+) | 753 | WP_180608570.1 | exodeoxyribonuclease III | - |
| CPY3401_RS00025 (CPY3401_00040) | - | 4043..4678 (-) | 636 | WP_000668030.1 | outer membrane protein | - |
| CPY3401_RS00030 (CPY3401_00050) | - | 4682..5035 (-) | 354 | WP_221062501.1 | hypothetical protein | - |
| CPY3401_RS00035 (CPY3401_00060) | recG | 5117..6982 (+) | 1866 | WP_221062502.1 | ATP-dependent DNA helicase RecG | - |
| CPY3401_RS00040 (CPY3401_00070) | - | 7025..7864 (+) | 840 | WP_259662944.1 | site-specific DNA-methyltransferase | - |
Sequence
Protein
Download Length: 475 a.a. Molecular weight: 54552.43 Da Isoelectric Point: 6.8744
>NTDB_id=86323 CPY3401_RS00010 WP_221062500.1 1689..3116(+) (comH) [Helicobacter pylori strain 3401]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNVPIQKPQNKPTSSQQSLQNFPYQESKLGSKNPKNSLLQPLAT
KISSANEVKTPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNTPNADINEHHESNENRDNVEKQAIRDPNVKEFACGKW
VYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSSTE
KCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNLNE
KFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNVPIQKPQNKPTSSQQSLQNFPYQESKLGSKNPKNSLLQPLAT
KISSANEVKTPTNDTKPPLKHSSEDQENNLFVTPPTEKTLPNNTPNADINEHHESNENRDNVEKQAIRDPNVKEFACGKW
VYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSSTE
KCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNLNE
KFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV
Nucleotide
Download Length: 1428 bp
>NTDB_id=86323 CPY3401_RS00010 WP_221062500.1 1689..3116(+) (comH) [Helicobacter pylori strain 3401]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCACCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCAAATGCCTTCTTTAAACGTGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAGCAAT
CTCTTCAAAACTTTCCTTACCAAGAGTCCAAATTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
AAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGATCAAGA
AAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATGAACACCATG
AAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGGAAGTGG
GTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAGCAGACTGCGACAGA
CATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTGTTCATA
AAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCTACAGAA
AAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACTAGACAATGCTATCTCATAGAAGAGCCTTTAAAACAAGCGTG
GGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAGAGCCGA
CTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTGAATGAA
AAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAAAGAATG
GGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAAGCACGC
CTTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCACCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCAAATGCCTTCTTTAAACGTGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAGCAAT
CTCTTCAAAACTTTCCTTACCAAGAGTCCAAATTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
AAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGATCAAGA
AAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATGAACACCATG
AAAGCAATGAAAATAGGGATAATGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGGAAGTGG
GTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAGCAGACTGCGACAGA
CATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTGTTCATA
AAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCTACAGAA
AAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACTAGACAATGCTATCTCATAGAAGAGCCTTTAAAACAAGCGTG
GGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAGAGCCGA
CTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTGAATGAA
AAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAAAGAATG
GGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAAGCACGC
CTTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comH | Helicobacter pylori 26695 |
92.276 |
100 |
0.931 |