Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   KI216_RS14830 Genome accession   NZ_AP024595
Coordinates   3151861..3152187 (-) Length   108 a.a.
NCBI ID   WP_026253436.1    Uniprot ID   -
Organism   Acinetobacter bouvetii strain JCM 18991     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3146861..3157187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI216_RS14810 (ACBO_28690) - 3147013..3147717 (-) 705 WP_005006969.1 FHA domain-containing protein -
  KI216_RS14815 (ACBO_28700) gspD 3147818..3150058 (-) 2241 WP_005006967.1 type II secretion system secretin GspD -
  KI216_RS14820 (ACBO_28710) - 3150097..3150948 (-) 852 WP_005006964.1 type II secretion system protein N -
  KI216_RS14825 (ACBO_28720) gspN 3150948..3151691 (-) 744 WP_005006962.1 type II secretion system protein N -
  KI216_RS14830 (ACBO_28730) hns 3151861..3152187 (-) 327 WP_026253436.1 H-NS family nucleoid-associated regulatory protein Regulator
  KI216_RS14835 (ACBO_28740) - 3152329..3152757 (-) 429 WP_005006958.1 acyl-CoA thioesterase -
  KI216_RS14840 (ACBO_28750) - 3152769..3153962 (-) 1194 WP_005006956.1 hypothetical protein -
  KI216_RS14845 (ACBO_28760) - 3153969..3154808 (-) 840 WP_005006954.1 hypothetical protein -
  KI216_RS14850 (ACBO_28770) - 3154805..3155575 (-) 771 WP_005006952.1 uroporphyrinogen-III synthase -
  KI216_RS14855 (ACBO_28780) hemC 3155581..3156498 (-) 918 WP_005006949.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12123.95 Da        Isoelectric Point: 9.5144

>NTDB_id=86320 KI216_RS14830 WP_026253436.1 3151861..3152187(-) (hns) [Acinetobacter bouvetii strain JCM 18991]
MMPDISNLSVEELKKLQVEAEALIASKKDQAVEDAYNQILAIAENVGLSIDQILELGATKRKKTTRKSVEPRYRSKANPN
DTWTGRGKQPRWLVAELEKGAKLESFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=86320 KI216_RS14830 WP_026253436.1 3151861..3152187(-) (hns) [Acinetobacter bouvetii strain JCM 18991]
ATCATGCCAGACATCAGTAATTTATCTGTTGAAGAACTTAAAAAACTTCAAGTTGAAGCGGAAGCGTTAATCGCTTCTAA
AAAAGATCAAGCGGTTGAAGATGCATATAACCAAATTTTAGCGATTGCTGAAAATGTCGGTTTAAGCATTGATCAAATTT
TAGAACTGGGCGCGACCAAGCGTAAGAAAACAACGCGGAAATCAGTAGAGCCGCGCTACCGCAGCAAGGCAAATCCAAAT
GATACATGGACCGGCCGCGGTAAACAGCCGCGCTGGCTGGTTGCGGAATTGGAAAAAGGCGCTAAGCTGGAAAGCTTCTT
AATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.481

100

0.815

Multiple sequence alignment