Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q7645_RS00510 Genome accession   NZ_CP131641
Coordinates   107466..108065 (-) Length   199 a.a.
NCBI ID   WP_003700890.1    Uniprot ID   A0AB74ESA6
Organism   Neisseria gonorrhoeae strain 2010C02-038     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102466..113065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7645_RS00495 (Q7645_00490) pilQ 104041..106236 (-) 2196 WP_010356660.1 type IV pilus secretin PilQ Machinery gene
  Q7645_RS00500 (Q7645_00495) pilP 106255..106800 (-) 546 WP_003692554.1 pilus assembly protein PilP Machinery gene
  Q7645_RS00505 (Q7645_00500) pilO 106818..107465 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  Q7645_RS00510 (Q7645_00505) pilN 107466..108065 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  Q7645_RS00515 (Q7645_00510) - 108068..109183 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  Q7645_RS00520 (Q7645_00515) - 109335..111731 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  Q7645_RS00525 (Q7645_00520) yihA 111852..112481 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22182.59 Da        Isoelectric Point: 10.1157

>NTDB_id=863155 Q7645_RS00510 WP_003700890.1 107466..108065(-) (pilN) [Neisseria gonorrhoeae strain 2010C02-038]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSKIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=863155 Q7645_RS00510 WP_003700890.1 107466..108065(-) (pilN) [Neisseria gonorrhoeae strain 2010C02-038]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGAAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

96.985

100

0.97