Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   UXR49_RS07815 Genome accession   NZ_CP147831
Coordinates   1626292..1628562 (-) Length   756 a.a.
NCBI ID   WP_332329932.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1621292..1633562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXR49_RS07795 (UXR49_07795) - 1621799..1622674 (-) 876 WP_123073397.1 N-acetylmuramoyl-L-alanine amidase -
  UXR49_RS07800 (UXR49_07800) dtd 1622671..1623123 (-) 453 WP_000869983.1 D-aminoacyl-tRNA deacylase -
  UXR49_RS07805 (UXR49_07805) - 1623135..1625324 (-) 2190 WP_001058587.1 RelA/SpoT family protein -
  UXR49_RS07810 (UXR49_07810) - 1625752..1626270 (-) 519 WP_000364542.1 adenine phosphoribosyltransferase -
  UXR49_RS07815 (UXR49_07815) recJ 1626292..1628562 (-) 2271 WP_332329932.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  UXR49_RS07820 (UXR49_07820) secDF 1628765..1631044 (-) 2280 WP_000749795.1 protein translocase subunit SecDF -
  UXR49_RS07825 (UXR49_07825) yajC 1631319..1631579 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  UXR49_RS07830 (UXR49_07830) tgt 1631598..1632737 (-) 1140 WP_001112049.1 tRNA guanosine(34) transglycosylase Tgt -

Sequence

Protein


Download         Length: 756 a.a.        Molecular weight: 85499.80 Da        Isoelectric Point: 4.9419

>NTDB_id=863098 UXR49_RS07815 WP_332329932.1 1626292..1628562(-) (recJ) [Staphylococcus aureus strain BSN140]
MIKPKYKWKLTKPAEYISDELTSKLKLTPIVKKILESKSIIDEQAIESIISDTVINHDALQLSDMTKTIERIKRAIANDE
KILVYGDYDADGVTSTTILVTTLQLLGAQVGWHIPNRFTEGYGPNELAFRNAHDEGITLIITVDNGIQGHNEIKMVQDLG
VDVIVTDHHEIGSTLPEAYAIVHPMHPSFNYPFQQLCGAGVAYKLAQALIENVPDYFKALVAIGTIADLVSLTDENRSLV
KQGLKVLNDQCPTSVKALLKEAGYNDNIDEETIGFIIGPRLNAVGRLDDASLACELLMTDEEEAAFLAEQVEHFNRERKD
IVATITEEAMAMAETKVKKGDLFLLLAKENWHEGVLGIVASKIVETFALPTLILNIDREQNHAKGSARSIDQVSMFEILS
AHQELIAKFGGHHMAAGMTMDIENIESLAEGLNKWMKELSKTTSLDPVKQVDVLLTENDITIKNIRDMNRLRPFGTDFSR
PIFEMDDLSVSSVKAIGQQKNHLKLTLGESNIAALFWQNGHLEPELQDEQPINILGSVQINEWNGNQSPQLIIQDIAMNE
QQILDYRSKRKSLPFTENDENIVVLIHPKSDKVNANEYYYGEEIKQQTDKVVLRDLPTSMEDLSNSLQQLQFSQLYIVLQ
HNHSIYFDGIPNMDIFKKCYKALITKQETNIQKEGMLLCQHLSVKPDTLKFMLKVFLDLKFVTQEDGLIRINQQPDKRSI
DSSKVYQLRQQRMDVEKQLLYQDFSEIKNWIKSQLS

Nucleotide


Download         Length: 2271 bp        

>NTDB_id=863098 UXR49_RS07815 WP_332329932.1 1626292..1628562(-) (recJ) [Staphylococcus aureus strain BSN140]
ATGATTAAACCGAAGTATAAGTGGAAATTAACTAAACCAGCTGAATACATAAGTGATGAATTAACATCAAAATTAAAGTT
AACGCCAATCGTAAAAAAAATATTAGAAAGTAAATCGATTATTGATGAACAAGCAATAGAATCCATCATTTCAGATACAG
TTATCAATCATGATGCACTGCAATTGAGCGATATGACTAAGACTATTGAAAGAATTAAAAGAGCGATAGCGAATGATGAG
AAAATCCTAGTTTATGGTGATTACGATGCCGACGGTGTTACCTCAACTACAATTTTAGTGACAACATTACAACTTTTAGG
TGCACAAGTAGGATGGCATATTCCTAACCGCTTTACCGAAGGATATGGACCAAACGAACTAGCATTTAGAAATGCTCATG
ATGAAGGCATAACATTAATCATAACTGTTGATAATGGCATACAAGGTCATAATGAAATTAAAATGGTTCAAGATTTAGGA
GTTGATGTCATTGTAACTGATCATCATGAAATTGGTAGTACATTACCAGAAGCATATGCAATCGTACATCCAATGCATCC
ATCGTTTAATTATCCGTTCCAACAATTGTGTGGTGCAGGTGTTGCGTATAAATTAGCACAAGCATTGATTGAAAATGTAC
CTGATTATTTTAAAGCATTAGTTGCGATAGGTACCATTGCGGATTTAGTATCCTTAACTGATGAAAATCGATCATTAGTG
AAACAAGGATTAAAAGTCTTGAATGATCAATGTCCGACCTCTGTTAAAGCATTGCTAAAAGAAGCGGGATACAATGACAA
TATTGATGAAGAAACAATTGGTTTTATTATTGGACCTAGACTTAATGCTGTAGGTCGTTTAGATGACGCATCATTAGCTT
GCGAATTGTTGATGACTGACGAAGAAGAAGCTGCATTTTTAGCAGAACAAGTTGAACATTTTAACCGTGAAAGAAAAGAT
ATTGTAGCAACTATCACAGAAGAAGCAATGGCTATGGCAGAAACGAAAGTTAAAAAGGGAGATTTATTTTTACTTTTAGC
AAAAGAAAATTGGCATGAAGGTGTCTTAGGTATTGTTGCTTCGAAAATTGTCGAAACATTTGCTTTGCCAACATTAATTT
TAAATATTGATAGGGAGCAAAATCATGCAAAAGGTTCCGCCAGATCAATTGATCAAGTGTCGATGTTTGAAATACTATCA
GCACATCAAGAGTTAATCGCTAAATTTGGCGGCCATCATATGGCTGCAGGTATGACGATGGATATTGAAAATATAGAATC
GTTAGCTGAAGGTTTAAATAAATGGATGAAAGAATTATCTAAAACAACTTCGTTAGATCCCGTAAAGCAAGTAGATGTAT
TATTAACAGAAAATGATATAACGATTAAAAATATTCGTGATATGAATCGTTTAAGACCCTTCGGAACAGATTTTTCTAGA
CCTATTTTTGAAATGGATGATTTATCAGTTTCTTCAGTTAAGGCGATAGGTCAACAAAAAAATCATCTAAAATTGACACT
TGGTGAAAGTAATATCGCCGCGCTATTTTGGCAAAATGGTCACTTAGAACCTGAGTTACAAGATGAACAGCCAATTAATA
TATTAGGATCTGTTCAAATCAACGAATGGAATGGTAATCAATCACCGCAATTAATTATTCAAGATATTGCGATGAATGAA
CAGCAAATATTAGATTATAGAAGTAAGCGAAAAAGTTTACCTTTTACAGAAAATGATGAAAATATTGTCGTGCTTATTCA
TCCTAAAAGTGATAAAGTAAATGCGAATGAATATTATTATGGTGAAGAAATTAAACAACAAACTGATAAAGTAGTATTAA
GAGATTTACCAACGTCAATGGAAGACTTGTCTAATTCCTTGCAACAACTGCAATTTTCTCAACTTTATATAGTTTTGCAA
CATAATCATTCGATTTACTTCGATGGTATACCTAATATGGATATTTTTAAAAAGTGTTATAAAGCATTAATAACTAAACA
AGAAACAAATATCCAGAAAGAGGGTATGTTATTGTGTCAACATTTAAGTGTGAAACCAGATACACTTAAATTCATGTTGA
AAGTTTTCTTAGACTTAAAATTTGTAACACAAGAAGATGGTTTAATTCGAATCAATCAACAACCTGATAAAAGATCGATT
GATTCCAGCAAAGTATATCAATTAAGACAACAACGTATGGATGTTGAAAAGCAATTATTATATCAAGATTTTTCAGAAAT
AAAAAATTGGATAAAGTCACAATTGTCGTGA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(311-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(562-751)

RecJ OB domain (RecJ_OB)

(451-555)

DHH family (DHH)

(81-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

38.144

100

0.392
  recJ Streptococcus pneumoniae strain D39V

38.076

100

0.382