Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   Q7648_RS06630 Genome accession   NZ_CP131632
Coordinates   1275896..1279102 (-) Length   1068 a.a.
NCBI ID   WP_341944657.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2018S05-288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1270896..1284102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7648_RS06610 (Q7648_06690) mtrC 1271499..1272737 (-) 1239 WP_123771486.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  Q7648_RS06615 (Q7648_06695) mtrR 1273034..1273621 (+) 588 WP_123768208.1 multidrug efflux system transcriptional repressor MtrR -
  Q7648_RS06620 (Q7648_06700) - 1273714..1273926 (-) 213 WP_050169387.1 hypothetical protein -
  Q7648_RS06625 (Q7648_06705) mtrF 1274258..1275826 (+) 1569 WP_003702953.1 AbgT family antimetabolite efflux transporter MtrF -
  Q7648_RS06630 (Q7648_06710) recC 1275896..1279102 (-) 3207 WP_341944657.1 exodeoxyribonuclease V subunit gamma Machinery gene
  Q7648_RS06635 (Q7648_06715) - 1279203..1280612 (-) 1410 WP_003693752.1 PepSY domain-containing protein -
  Q7648_RS06640 (Q7648_06720) - 1280956..1281296 (-) 341 Protein_1294 cytochrome c5 family protein -
  Q7648_RS06645 (Q7648_06725) ccoP 1281411..1282274 (-) 864 Protein_1295 cytochrome-c oxidase, cbb3-type subunit III -
  Q7648_RS06650 (Q7648_06730) - 1282298..1282468 (-) 171 WP_003693747.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  Q7648_RS06655 (Q7648_06735) ccoO 1282473..1283084 (-) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence

Protein


Download         Length: 1068 a.a.        Molecular weight: 120096.67 Da        Isoelectric Point: 4.8361

>NTDB_id=863038 Q7648_RS06630 WP_341944657.1 1275896..1279102(-) (recC) [Neisseria gonorrhoeae strain 2018S05-288]
MFYLYQSNRLESLAALFARIQKVKPLKCALQPEQIVVQSQGMRRYLNTCLARDLGVAANLAFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
HWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEEETPVFEEGGRDTLLHALQTDIQNLKMPSETV
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPLFHALSCLFDLLESRFEVDKVLVLLETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQA
ADRMILGWMLPEGGNPMWQDVSAWYADVNQTALFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLETLFQAGPDDQK
AVQNLENEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLVAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMAGIGSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQL
AWSEPHIGEAWEPAEPFEPQHAEQIAETYIGARREGQDFSQTAARIAAESLLPSGELGKLWQQSFQTAAKQIDTSVLNSP
KLPPFPYAIPSDGQILKGSLGNLYRCGQVFYAYGKPNAPQRVAFLLEHLIFCAVMPSEAETRQTFIVQSGETEVLAEIAQ
DRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEAFAQKQDWEAALKKAQTAYYGSKVSKGQKDYTEVALVFGNASQNPL
EQPLFENLARLLADTLAAAEKREGTGEA

Nucleotide


Download         Length: 3207 bp        

>NTDB_id=863038 Q7648_RS06630 WP_341944657.1 1275896..1279102(-) (recC) [Neisseria gonorrhoeae strain 2018S05-288]
ATGTTTTACCTGTACCAATCCAACCGCCTCGAATCGCTCGCTGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATGTGCCTTGCAGCCCGAACAGATTGTTGTGCAGAGCCAGGGGATGCGCCGCTACCTCAACACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGGCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGTTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGCAGAATTTCAAAACGG
AGCGGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGAGAATCGGCGGATTACCAGCTTGCGGGAC
AGCTTGCAGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGATACTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGACGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAACTGCTTGCCGCGTTGGACAAGGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGACGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
CATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATCTGACGCAGGCAGGGCATCCGCT
GCTTGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGAAGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAACGGTG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAACTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAATATCGAACCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAACCCGGCGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAA
ATCAGCCGCCGGCAACCGCTGTTTCATGCTTTGTCATGCCTGTTCGACTTGTTGGAAAGCCGATTTGAAGTCGACAAAGT
GCTTGTGCTTTTAGAAACCGCGCCCGTGTTGCGCCGTTTCGGACTGACCGGGGACGATTTACCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GCAGACCGTATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAACCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAACCAAACCGCCCTGTTCGGACGTTTTGCCGCCTTCCTCGAAACCCTGTCGGATATTGCCCGGATATGGCGGCAAC
CTGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTTCAAGCCGGGCCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGCGGAAACCGAATTGGCGCAATTTTCCGGACAGTTGCCGCA
ACAAACCGTCATCCGCCATATCCGACGTTTCCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGCAGCCTGCCCTTTAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGGTTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
CTTCCTCGAAGCCCTCATCAGCGCGCGCGAAATCCTGTATTTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAAC
TGGCTTCGTCTTCCCTGTTGGGCGAACTCATCGATACCGTTGCCGCTATGGCGGGCATTGGTAGCCGCCAACTTGCACAA
AATTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGACCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAACCCCGTCAAAGTATGGCTGCAGCAGCTT
GCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCGGAGCAAATCGCCGA
AACCTATATCGGGGCGCGCCGCGAAGGACAAGATTTTTCCCAAACCGCCGCCCGTATCGCGGCGGAAAGCCTGCTGCCTT
CCGGAGAATTGGGAAAACTTTGGCAGCAGTCCTTCCAAACCGCCGCCAAACAAATCGACACGTCGGTTTTAAACAGCCCA
AAACTGCCCCCGTTTCCATACGCCATACCGTCGGACGGGCAAATCCTGAAAGGCAGCTTGGGCAATCTGTACCGCTGCGG
TCAGGTGTTTTACGCCTACGGCAAACCCAATGCGCCGCAACGTGTGGCTTTTTTGTTGGAACACCTGATATTTTGCGCCG
TTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACAGAAGTATTGGCGGAAATCGCGCAA
GACAGGGCATTGCAGCTGTTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGCCAA
AACCTCGCTTGCCGCCGCCGAAGCGTTTGCCCAAAAACAAGATTGGGAAGCCGCCCTGAAAAAAGCCCAAACCGCCTATT
ACGGCAGCAAAGTCAGCAAAGGGCAGAAAGACTATACCGAAGTCGCCCTCGTGTTCGGCAACGCAAGCCAAAACCCGCTC
GAACAGCCCCTGTTTGAAAACCTCGCCCGCCTGCTCGCCGACACGCTTGCCGCAGCGGAAAAGAGGGAAGGGACCGGAGA
AGCCTGA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(778-996)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

97.846

100

0.978