Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WDV80_RS05160 Genome accession   NZ_CP147733
Coordinates   1064269..1065003 (-) Length   244 a.a.
NCBI ID   WP_000589162.1    Uniprot ID   Q8E1S3
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1059269..1070003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS05145 (WDV80_05145) proB 1060124..1060927 (-) 804 WP_000820352.1 glutamate 5-kinase -
  WDV80_RS05150 (WDV80_05150) - 1061068..1062453 (+) 1386 WP_001865878.1 PTS transporter subunit EIIC -
  WDV80_RS05155 (WDV80_05155) - 1062661..1064265 (-) 1605 WP_001104587.1 ABC transporter permease -
  WDV80_RS05160 (WDV80_05160) pptA 1064269..1065003 (-) 735 WP_000589162.1 ABC transporter ATP-binding protein Regulator
  WDV80_RS05165 (WDV80_05165) - 1065023..1065328 (-) 306 WP_000711207.1 bacteriocin immunity protein -
  WDV80_RS05170 (WDV80_05170) recP/tkt 1065541..1067526 (-) 1986 WP_000141866.1 transketolase Machinery gene
  WDV80_RS05175 (WDV80_05175) - 1067651..1069081 (-) 1431 WP_001217283.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27505.68 Da        Isoelectric Point: 4.7523

>NTDB_id=862982 WDV80_RS05160 WP_000589162.1 1064269..1065003(-) (pptA) [Streptococcus agalactiae strain SagR272_TC]
MIKFEHVSKVYGEKEALSDLTLSVKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMKYPDKDLETIYLELAGRQA
SREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=862982 WDV80_RS05160 WP_000589162.1 1064269..1065003(-) (pptA) [Streptococcus agalactiae strain SagR272_TC]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGAGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTGTTAAAGATGG
TGAGATTTTTGGATTAATAGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTAAATTTAACCGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGACGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCCCTTCTTCCAAATCCTGACATTTGGATTCTAGATGAGCCGTTA
ACTGGTTTAGACCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTCTTAGCAGTTGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGAAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AGTAGGGAGGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E1S3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.683

99.59

0.385
  pptA Streptococcus salivarius strain HSISS4

38.272

99.59

0.381