Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WDV80_RS05065 Genome accession   NZ_CP147733
Coordinates   1042094..1042693 (+) Length   199 a.a.
NCBI ID   WP_000248792.1    Uniprot ID   Q3K380
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037094..1047693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS05035 (WDV80_05035) - 1037241..1037723 (+) 483 WP_000159885.1 S-ribosylhomocysteine lyase -
  WDV80_RS05040 (WDV80_05040) - 1037948..1039411 (-) 1464 WP_001287870.1 cell division site-positioning protein MapZ family protein -
  WDV80_RS05045 (WDV80_05045) - 1039424..1040578 (-) 1155 WP_000664851.1 class I SAM-dependent RNA methyltransferase -
  WDV80_RS05055 (WDV80_05055) gpsB 1041048..1041380 (-) 333 WP_000146544.1 cell division regulator GpsB -
  WDV80_RS05060 (WDV80_05060) - 1041501..1042019 (-) 519 WP_000843096.1 DUF1273 domain-containing protein -
  WDV80_RS05065 (WDV80_05065) recU 1042094..1042693 (+) 600 WP_000248792.1 Holliday junction resolvase RecU Machinery gene
  WDV80_RS05070 (WDV80_05070) pbp1a 1042680..1044926 (+) 2247 WP_000628369.1 penicillin-binding protein PBP1A -
  WDV80_RS05075 (WDV80_05075) pepC 1044972..1046306 (-) 1335 WP_000041114.1 aminopeptidase C -
  WDV80_RS05080 (WDV80_05080) nadE 1046419..1047240 (-) 822 WP_000174854.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23101.69 Da        Isoelectric Point: 9.8314

>NTDB_id=862981 WDV80_RS05065 WP_000248792.1 1042094..1042693(+) (recU) [Streptococcus agalactiae strain SagR272_TC]
MVNYPHQLIRKTTVTKSKKKKIDFANRGMSFEAAINATNDYYLSHELAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQA
STTDYSGVYKGYYIDFEAKETRQKTAMPMKNFHAHQIEHMANVLQQKGICFVLLHFSTLKETYLLPANELISFYQIDKGN
KSMPIDYIRKNGFFVKESAFPQVPYLDIIEEKLLGGDYN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=862981 WDV80_RS05065 WP_000248792.1 1042094..1042693(+) (recU) [Streptococcus agalactiae strain SagR272_TC]
ATGGTTAACTATCCACATCAGCTTATTCGGAAAACAACAGTTACAAAATCAAAGAAAAAGAAAATCGATTTTGCCAACCG
TGGTATGTCATTTGAAGCTGCTATCAATGCAACCAATGACTACTATTTGTCTCACGAATTAGCTGTCATTCATAAGAAAC
CAACGCCAGTACAAATCGTCAAGGTAGATTATCCTAAACGTAGTCGTGCTAAGATTGTAGAAGCTTATTTTAGACAAGCT
TCTACTACTGATTATTCTGGTGTTTACAAAGGTTACTATATTGACTTTGAAGCCAAAGAAACCCGGCAGAAAACTGCTAT
GCCTATGAAAAATTTTCATGCTCACCAAATAGAGCACATGGCAAATGTATTACAGCAAAAAGGGATTTGCTTTGTCTTGC
TTCATTTTTCCACACTTAAGGAAACCTATCTACTCCCTGCTAATGAGTTAATTTCATTTTATCAGATTGATAAAGGCAAT
AAATCAATGCCTATTGATTATATCAGAAAAAATGGATTTTTCGTAAAGGAGAGTGCCTTTCCTCAAGTCCCTTACTTAGA
TATTATTGAAGAAAAATTATTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K380

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.223

98.995

0.477