Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   WDV80_RS04880 Genome accession   NZ_CP147733
Coordinates   1005076..1005741 (-) Length   221 a.a.
NCBI ID   WP_336390408.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1000076..1010741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS04875 (WDV80_04875) raiA 1004445..1004999 (-) 555 WP_000599094.1 ribosome-associated translation inhibitor RaiA -
  WDV80_RS04880 (WDV80_04880) comFC/cflB 1005076..1005741 (-) 666 WP_336390408.1 ComF family protein Machinery gene
  WDV80_RS04885 (WDV80_04885) comFA/cflA 1005741..1007030 (-) 1290 WP_000432961.1 DEAD/DEAH box helicase Machinery gene
  WDV80_RS04890 (WDV80_04890) - 1007086..1007730 (+) 645 WP_001108147.1 YigZ family protein -
  WDV80_RS04895 (WDV80_04895) cysK 1007821..1008747 (+) 927 WP_000036948.1 cysteine synthase A -
  WDV80_RS04900 (WDV80_04900) - 1008899..1009987 (-) 1089 WP_000862118.1 glycerol dehydrogenase -
  WDV80_RS04905 (WDV80_04905) - 1010055..1010723 (-) 669 WP_000394891.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25490.70 Da        Isoelectric Point: 9.3073

>NTDB_id=862976 WDV80_RS04880 WP_336390408.1 1005076..1005741(-) (comFC/cflB) [Streptococcus agalactiae strain SagR272_TC]
MTCLLCHEIDLSQLTFVELMLLKPKQNVICQTCKSSFEALSREMGCQTCCKQIPQKQCQDCIYWGKKGIEVNHFSLYRYN
EAMKKYFSLFKFQGDYLLKDVFTKEIKAALKKYKGYTIVPVPLSHEGYQNRQFNQVIAFLQSANIPYKNILSKKDGGKQS
ANNKEERLKQVQQFTLKNEAELGDNLLIVDDIYTTGATIAQIRKLLEEKGIKNIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=862976 WDV80_RS04880 WP_336390408.1 1005076..1005741(-) (comFC/cflB) [Streptococcus agalactiae strain SagR272_TC]
ATGACTTGTTTGTTATGTCATGAAATAGATTTATCGCAATTAACTTTTGTGGAACTTATGCTTCTAAAACCAAAGCAAAA
CGTAATTTGTCAAACGTGCAAGAGTAGTTTTGAAGCACTTAGTAGGGAGATGGGTTGCCAAACATGTTGCAAGCAAATTC
CCCAAAAACAATGTCAAGATTGTATTTATTGGGGTAAAAAAGGTATAGAGGTAAATCATTTTTCCCTTTATAGATACAAT
GAAGCAATGAAAAAATATTTTTCTCTTTTTAAATTTCAAGGGGATTATTTGTTGAAAGATGTTTTTACAAAAGAAATAAA
AGCTGCTCTAAAAAAGTATAAGGGCTACACTATAGTGCCAGTTCCCTTGAGTCATGAAGGATACCAAAATAGGCAATTTA
ATCAAGTGATTGCTTTTCTACAATCGGCAAATATACCTTACAAAAATATTCTTTCTAAAAAAGATGGAGGTAAGCAATCG
GCTAATAATAAAGAAGAAAGACTCAAACAAGTTCAGCAATTTACATTAAAAAATGAGGCTGAGTTAGGGGACAACCTTTT
AATTGTTGATGATATTTATACAACAGGCGCAACAATAGCACAAATCAGGAAACTATTAGAAGAAAAAGGTATAAAAAATA
TAAAAAGTTTTTCATTAGCACGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

43.439

100

0.434
  comFC/cflB Streptococcus pneumoniae Rx1

42.986

100

0.43
  comFC/cflB Streptococcus pneumoniae D39

42.986

100

0.43
  comFC/cflB Streptococcus pneumoniae R6

42.986

100

0.43
  comFC/cflB Streptococcus mitis SK321

42.081

100

0.421
  comFC/cflB Streptococcus mitis NCTC 12261

42.081

100

0.421