Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   WDV80_RS00100 Genome accession   NZ_CP147733
Coordinates   22643..23083 (+) Length   146 a.a.
NCBI ID   WP_000431168.1    Uniprot ID   R4Z9I5
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 17643..28083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS00080 (WDV80_00080) - 17759..18268 (-) 510 WP_000870955.1 DUF308 domain-containing protein -
  WDV80_RS00085 (WDV80_00085) gdhA 18436..19785 (+) 1350 WP_000200441.1 NADP-specific glutamate dehydrogenase -
  WDV80_RS00090 (WDV80_00090) - 19855..20265 (+) 411 WP_000594934.1 peptide deformylase -
  WDV80_RS00095 (WDV80_00095) - 20302..22374 (-) 2073 WP_000726912.1 bifunctional metallophosphatase/5'-nucleotidase -
  WDV80_RS00100 (WDV80_00100) rcrR 22643..23083 (+) 441 WP_000431168.1 MarR family transcriptional regulator Regulator
  WDV80_RS00105 (WDV80_00105) rcrP 23130..24947 (+) 1818 WP_000481818.1 ABC transporter ATP-binding protein Regulator
  WDV80_RS00110 (WDV80_00110) rcrQ 24937..26691 (+) 1755 WP_000851088.1 ABC transporter ATP-binding protein Regulator
  WDV80_RS00115 (WDV80_00115) - 26799..27425 (+) 627 WP_112477778.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16968.84 Da        Isoelectric Point: 9.8384

>NTDB_id=862930 WDV80_RS00100 WP_000431168.1 22643..23083(+) (rcrR) [Streptococcus agalactiae strain SagR272_TC]
MENPLQKARILVNQLEKYLDRYAKEYDVEHLAGPQGHLVMHLYKHPDKDMSIKDAEEILHISKSVASNLVKRMEKNGFIA
IVPSKTDKRVKYLYLTHLGKQKATQFEIFLEKLHSTMLAGITKEEIRTTKKVIRTLAKNMAMEDFD

Nucleotide


Download         Length: 441 bp        

>NTDB_id=862930 WDV80_RS00100 WP_000431168.1 22643..23083(+) (rcrR) [Streptococcus agalactiae strain SagR272_TC]
ATGGAGAATCCTCTTCAAAAAGCACGAATACTTGTTAATCAACTTGAAAAGTATTTAGATCGTTATGCAAAAGAGTATGA
TGTTGAACATTTAGCGGGTCCACAAGGACACTTAGTGATGCATCTCTATAAACATCCTGACAAGGATATGTCTATAAAAG
ATGCTGAAGAAATTTTACACATCTCTAAGTCTGTAGCTTCTAATTTGGTAAAACGGATGGAAAAAAATGGATTTATTGCG
ATTGTTCCATCTAAGACAGATAAGCGTGTGAAATACCTTTATTTGACTCATCTAGGTAAACAAAAGGCTACACAATTTGA
AATTTTCTTAGAAAAATTGCACAGTACCATGTTAGCAGGTATTACTAAAGAAGAGATACGTACTACCAAAAAGGTTATTA
GAACATTAGCTAAAAATATGGCGATGGAAGATTTTGATTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7DVS

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

95.89

0.411