Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q7650_RS02680 Genome accession   NZ_CP131626
Coordinates   520096..520761 (+) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020S05-258     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515096..525761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7650_RS02655 (Q7650_02655) cysT 515229..516056 (-) 828 WP_123766624.1 sulfate ABC transporter permease subunit CysT -
  Q7650_RS02660 (Q7650_02660) - 516237..516569 (+) 333 WP_003687908.1 hypothetical protein -
  Q7650_RS02665 (Q7650_02665) - 516899..517408 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q7650_RS02670 (Q7650_02670) - 517638..518219 (-) 582 WP_003698180.1 superoxide dismutase -
  Q7650_RS02675 (Q7650_02675) dnaB 518382..519788 (+) 1407 WP_050164993.1 replicative DNA helicase -
  Q7650_RS02680 (Q7650_02680) pilH 520096..520761 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7650_RS02685 (Q7650_02685) pilV 520793..521404 (+) 612 WP_050164991.1 type IV pilus modification protein PilV Machinery gene
  Q7650_RS02690 (Q7650_02690) pilJ 521401..522333 (+) 933 WP_050164989.1 PilW family protein Machinery gene
  Q7650_RS02695 (Q7650_02695) pilK 522312..522923 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  Q7650_RS02700 (Q7650_02700) pilL 522925..523398 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7650_RS02705 (Q7650_02705) - 523468..523776 (-) 309 WP_025456241.1 AzlD family protein -
  Q7650_RS02710 (Q7650_02710) - 523773..524482 (-) 710 Protein_524 AzlC family ABC transporter permease -
  Q7650_RS02715 (Q7650_02715) dut 524648..525100 (+) 453 WP_341978945.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=862928 Q7650_RS02680 WP_047918678.1 520096..520761(+) (pilH) [Neisseria gonorrhoeae strain 2020S05-258]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=862928 Q7650_RS02680 WP_047918678.1 520096..520761(+) (pilH) [Neisseria gonorrhoeae strain 2020S05-258]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869