Detailed information
Bioinformatically predicted
Overview
| Name | luxS | Type | Regulator |
| Locus tag | AABJ42_RS05410 | Genome accession | NZ_AP027479 |
| Coordinates | 1121861..1122376 (+) | Length | 171 a.a. |
| NCBI ID | WP_001130211.1 | Uniprot ID | A0ABR8T9Y4 |
| Organism | Escherichia coli strain LR-17-1 | ||
| Function | induction of competence (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1116861..1127376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ42_RS05370 (VEE14_10420) | csrA | 1117723..1117908 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| AABJ42_RS05395 (VEE14_10430) | yqaB | 1119091..1119657 (+) | 567 | WP_000273309.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| AABJ42_RS05400 (VEE14_10440) | yqaA | 1119654..1120082 (+) | 429 | WP_001287454.1 | YqaA family protein | - |
| AABJ42_RS05405 (VEE14_10450) | gshA | 1120155..1121711 (+) | 1557 | WP_023281437.1 | glutamate--cysteine ligase | - |
| AABJ42_RS05410 (VEE14_10460) | luxS | 1121861..1122376 (+) | 516 | WP_001130211.1 | S-ribosylhomocysteine lyase | Regulator |
| AABJ42_RS05415 (VEE14_10470) | emrB | 1122440..1123978 (-) | 1539 | WP_001295176.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| AABJ42_RS05420 (VEE14_10480) | emrA | 1123995..1125167 (-) | 1173 | WP_001326681.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| AABJ42_RS05425 (VEE14_10490) | emrR | 1125294..1125824 (-) | 531 | WP_000378442.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| AABJ42_RS05430 (VEE14_10500) | ygaH | 1125915..1126250 (-) | 336 | WP_000119763.1 | L-valine transporter subunit YgaH | - |
| AABJ42_RS05435 (VEE14_10510) | ygaZ | 1126240..1126977 (-) | 738 | WP_000445651.1 | L-valine exporter subunit YgaZ | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19416.19 Da Isoelectric Point: 5.0362
>NTDB_id=86291 AABJ42_RS05410 WP_001130211.1 1121861..1122376(+) (luxS) [Escherichia coli strain LR-17-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI
Nucleotide
Download Length: 516 bp
>NTDB_id=86291 AABJ42_RS05410 WP_001130211.1 1121861..1122376(+) (luxS) [Escherichia coli strain LR-17-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| luxS | Vibrio cholerae strain A1552 |
73.099 |
100 |
0.731 |