Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q7651_RS02695 Genome accession   NZ_CP131622
Coordinates   522053..522664 (+) Length   203 a.a.
NCBI ID   WP_123768185.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020N07-265     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517053..527664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7651_RS02670 (Q7651_02680) - 517355..517936 (-) 582 WP_003698180.1 superoxide dismutase -
  Q7651_RS02675 (Q7651_02685) dnaB 518099..519505 (+) 1407 WP_047918976.1 replicative DNA helicase -
  Q7651_RS02680 (Q7651_02690) pilH 519813..520475 (+) 663 WP_048339589.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7651_RS02685 (Q7651_02695) pilV 520507..521115 (+) 609 WP_341948102.1 type IV pilus modification protein PilV Machinery gene
  Q7651_RS02690 (Q7651_02700) pilJ 521112..522074 (+) 963 WP_341944760.1 PilW family protein Machinery gene
  Q7651_RS02695 (Q7651_02705) pilK 522053..522664 (+) 612 WP_123768185.1 pilus assembly protein Machinery gene
  Q7651_RS02700 (Q7651_02710) pilL 522666..523139 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7651_RS02705 (Q7651_02715) - 523209..523517 (-) 309 WP_025456241.1 AzlD family protein -
  Q7651_RS02710 (Q7651_02720) - 523514..524223 (-) 710 Protein_524 AzlC family ABC transporter permease -
  Q7651_RS02715 (Q7651_02725) dut 524389..524841 (+) 453 WP_003687923.1 dUTP diphosphatase -
  Q7651_RS02720 (Q7651_02730) dapC 524919..526106 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -
  Q7651_RS02725 (Q7651_02735) yaaA 526262..527041 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22031.95 Da        Isoelectric Point: 8.0862

>NTDB_id=862884 Q7651_RS02695 WP_123768185.1 522053..522664(+) (pilK) [Neisseria gonorrhoeae strain 2020N07-265]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRPCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=862884 Q7651_RS02695 WP_123768185.1 522053..522664(+) (pilK) [Neisseria gonorrhoeae strain 2020N07-265]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTCCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956