Detailed information NTG0862859

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: WDV79_RS04020
• Genome accession: NZ_CP147731
• Coordinates: 814963..817071 (+)
• Length: 702 a.a.
• NCBI ID: WP_000002814.1
• Uniprot ID: -
• Organism: Streptococcus agalactiae strain SagR266
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 809963..822071

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDV79_RS04000 (WDV79_04000)	-	810015..811829 (-)	1815	WP_000007465.1	exonuclease domain-containing protein	-
WDV79_RS04005 (WDV79_04005)	-	812246..813466 (+)	1221	WP_000248017.1	AbiH family protein	-
WDV79_RS04010 (WDV79_04010)	rplL	813601..813966 (-)	366	WP_001196973.1	50S ribosomal protein L7/L12	-
WDV79_RS04015 (WDV79_04015)	rplJ	814030..814530 (-)	501	WP_001287288.1	50S ribosomal protein L10	-
WDV79_RS04020 (WDV79_04020)	clpC	814963..817071 (+)	2109	WP_000002814.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
WDV79_RS04025 (WDV79_04025)	mmuM	817164..818108 (-)	945	Protein_798	homocysteine S-methyltransferase	-
WDV79_RS04030 (WDV79_04030)	-	818113..819489 (-)	1377	Protein_799	amino acid permease	-
WDV79_RS04035 (WDV79_04035)	-	819619..820269 (-)	651	WP_000120088.1	HXXEE domain-containing protein	-
WDV79_RS04040 (WDV79_04040)	-	820427..820930 (-)	504	WP_000645481.1	HXXEE domain-containing protein	-
WDV79_RS04045 (WDV79_04045)	-	821022..821570 (+)	549	WP_000140663.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77750.51 Da
• Isoelectric Point: 4.8125

>NTDB_id=862859 WDV79_RS04020 WP_000002814.1 814963..817071(+) (clpC) [Streptococcus agalactiae strain SagR266]
MANNNFYNRDPFGNMDDIFNSLMGNMGGYNSENKRYLINGREVTPEEFSQYRQTGKLPGQELNNQNTPTNQVSADSVLTK
LGTNLTDQARQHLLDPVIGRNKEIQETAEILARRTKNNPVLVGDAGVGKTAVIEGLAQAIINGDVPAAIKNKEIISIDIS
SLEAGTQYRGSFEENIQNIIKEVKETGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDTFNILMGIRNLYEQHHNVVLPDSVLKAAVDLSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDLKSLEKEIAEQRDKQEKAVNTEDFEEALKVKTRIEELQNQIDNHTEGQKVTATINDIAMSIERLTGVPVSNM
GASDIERLKELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGSKDAIVR
LDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEAFTGDSDKDLKIMERISPYFRPEFLNRFNGVIEFSHLSKDDLSEIVDLMLDEVNQTISKKGIDLV
VDENVKSHLIELGYDEAMGVRPLRRVIEQEIRDRITDYYLDHTDVKHLKANLQDGQIVISER

Nucleotide

• Length: 2109 bp

>NTDB_id=862859 WDV79_RS04020 WP_000002814.1 814963..817071(+) (clpC) [Streptococcus agalactiae strain SagR266]
ATGGCAAATAATAATTTTTATAATCGTGACCCTTTTGGAAATATGGATGATATTTTTAATTCTCTAATGGGAAATATGGG
GGGCTATAACAGTGAGAATAAGCGATACTTAATCAATGGACGGGAAGTTACTCCTGAAGAATTCAGTCAATATCGTCAAA
CTGGAAAACTCCCCGGTCAAGAGCTAAATAACCAAAACACTCCTACAAACCAAGTCTCTGCAGATAGTGTTTTGACTAAA
TTAGGAACTAATTTAACCGATCAAGCACGTCAGCATTTGCTAGATCCAGTTATTGGACGAAACAAAGAAATTCAGGAAAC
TGCAGAAATTCTAGCTCGTCGTACTAAAAATAATCCTGTTCTGGTTGGTGATGCAGGTGTTGGTAAAACAGCTGTTATTG
AAGGTTTGGCACAAGCAATTATAAATGGTGATGTCCCTGCTGCTATCAAAAATAAAGAAATCATTTCGATAGATATTTCT
AGCCTTGAAGCTGGCACCCAATATAGGGGTAGTTTTGAAGAAAATATTCAAAATATCATAAAAGAAGTTAAGGAAACAGG
AAATATTATTCTCTTCTTTGATGAAATACACCAAATATTAGGAGCCGGTTCAACTGGTGGTGATAGTGGCTCTAAGGGGC
TCGCAGATATACTTAAGCCTGCACTTTCACGTGGTGAGTTAACGGTTATAGGTGCAACTACTCAAGATGAATATCGTAAC
ACCATTCTCAAGAATGCTGCCTTAGCACGTCGCTTTAACGAAGTTAAAGTCAATGCACCTTCTGCACAAGATACTTTCAA
TATCCTTATGGGGATAAGAAACCTCTATGAGCAACATCATAATGTTGTTTTACCTGACTCTGTTTTGAAAGCAGCTGTAG
ATTTATCTATTCAATACATCCCACAAAGAAGTCTCCCTGATAAAGCAATTGACCTTATTGATATGACTGCTGCACACCTA
GCTGCGCAACATCCCGTAACTGACCTTAAATCCTTAGAAAAAGAAATCGCTGAGCAAAGAGACAAGCAAGAAAAAGCTGT
CAATACTGAAGATTTTGAAGAAGCTCTTAAGGTCAAGACACGCATTGAAGAGTTACAAAACCAGATTGATAATCATACCG
AAGGACAAAAAGTCACTGCAACTATCAACGATATCGCTATGTCAATTGAGCGTCTAACTGGAGTTCCTGTATCAAATATG
GGTGCTAGTGATATTGAACGCTTAAAAGAACTTGGCAATCGTCTAAAAGGTAAAGTCATTGGTCAAAATGATGCTGTTGA
GGCAGTTGCGAGAGCTATTCGCCGAAATCGTGCTGGTTTCGATGATGGTAATCGTCCGATTGGTAGCTTTCTATTTGTTG
GACCAACTGGAGTTGGTAAAACCGAGCTAGCAAAGCAATTAGCTTTTGATATGTTCGGATCAAAGGATGCTATCGTTAGA
CTTGATATGTCTGAATATAATGATCGTACAGCAGTTTCTAAGCTAATTGGAGCGACTGCTGGTTACGTTGGTTATGACGA
CAATAGTAATACACTAACAGAACGTATCCGTCGAAATCCTTATTCTATTGTTCTTCTTGATGAAATCGAAAAAGCTGACC
CGCAAGTTATCACGCTTCTCCTTCAAGTTCTAGATGATGGCCGTTTAACTGATGGTCAAGGAAACACTATTAACTTTAAA
AATACTGTTATCATTGCAACCTCAAATGCAGGTTTTGGAAACGAAGCATTTACAGGTGACAGCGATAAAGACTTGAAAAT
TATGGAACGAATTTCTCCATATTTCCGTCCAGAATTTCTAAATCGTTTCAATGGTGTTATTGAATTCTCTCACCTAAGCA
AAGATGACTTAAGCGAAATTGTAGATTTGATGCTTGATGAAGTTAACCAAACAATTAGCAAAAAAGGAATTGACCTTGTG
GTAGATGAAAATGTTAAATCACACTTAATTGAACTGGGTTATGACGAAGCAATGGGAGTACGTCCATTGCGCCGTGTCAT
CGAGCAAGAAATTCGAGATCGCATCACAGACTACTATCTCGATCATACAGACGTTAAACACCTAAAAGCTAATTTGCAAG
ATGGCCAAATCGTCATTTCTGAAAGATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (445-604)

• AAA lid domain (AAA_lid_9) (261-358)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (612-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.202	99.288	0.469
clpE	Streptococcus pneumoniae Rx1	49.139	91.026	0.447
clpE	Streptococcus pneumoniae D39	49.139	91.026	0.447
clpE	Streptococcus pneumoniae R6	49.139	91.026	0.447
clpE	Streptococcus pneumoniae TIGR4	49.139	91.026	0.447
clpE	Streptococcus mutans UA159	49.367	90.028	0.444
clpC	Bacillus subtilis subsp. subtilis str. 168	44.478	95.442	0.425
clpC	Streptococcus pneumoniae TIGR4	42.994	89.459	0.385
clpC	Streptococcus pneumoniae Rx1	42.994	89.459	0.385
clpC	Streptococcus pneumoniae D39	42.994	89.459	0.385
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.022	90.171	0.379
clpC	Streptococcus thermophilus LMD-9	42.857	86.752	0.372
clpC	Streptococcus thermophilus LMG 18311	42.693	86.752	0.37
clpC	Streptococcus mutans UA159	40.498	91.453	0.37