Detailed information NTG0862822

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: WDM00_RS13405
• Genome accession: NZ_CP147726
• Coordinates: 2921262..2923097 (-)
• Length: 611 a.a.
• NCBI ID: WP_114732572.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain CNCTC 6536
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2916262..2928097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDM00_RS13385 (WDM00_13395)	fhuA	2916338..2918437 (-)	2100	WP_185841376.1	TonB-dependent siderophore receptor FhuA	-
WDM00_RS13390 (WDM00_13400)	-	2918572..2920401 (+)	1830	WP_367007801.1	ABC transporter ATP-binding protein	-
WDM00_RS13395 (WDM00_13405)	-	2920437..2920799 (-)	363	WP_187377469.1	hypothetical protein	-
WDM00_RS13400 (WDM00_13410)	-	2920970..2921269 (-)	300	WP_148532480.1	DUF3630 family protein	-
WDM00_RS13405 (WDM00_13415)	recQ	2921262..2923097 (-)	1836	WP_114732572.1	ATP-dependent DNA helicase RecQ	Machinery gene
WDM00_RS13410 (WDM00_13420)	rarD	2923324..2924166 (+)	843	WP_000264463.1	EamA family transporter RarD	-
WDM00_RS13415 (WDM00_13425)	ggt	2924340..2926094 (+)	1755	WP_185841237.1	gamma-glutamyltransferase	-
WDM00_RS13420 (WDM00_13430)	-	2926251..2927054 (+)	804	WP_162796643.1	AraC family transcriptional regulator	-
WDM00_RS13425 (WDM00_13435)	-	2927129..2927797 (+)	669	WP_001004604.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69151.45 Da
• Isoelectric Point: 7.1386

>NTDB_id=862822 WDM00_RS13405 WP_114732572.1 2921262..2923097(-) (recQ) [Vibrio cholerae strain CNCTC 6536]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMHWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=862822 WDM00_RS13405 WP_114732572.1 2921262..2923097(-) (recQ) [Vibrio cholerae strain CNCTC 6536]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCACTGGTGCTGGAAGGGGTCACGTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTCGCCGCCGAGTGTGTCAATTCCACCTTGGCGCGCGAGGAGCT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTCGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGTCCTGAATACGCCTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCAGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCGCAAGTGATTCGTTATCTGGAAACGCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTCGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGATGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGCCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCTGA
CATGCACTGGCTGCGCCGCATGCTGGATGAAAAGCCCGATGGCGCGCAAAAACAGGTTGAAAGCCACAAACTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGTTGCTCAATTATTTTGGCGAATATCGCGATAAGCCATGT
GGTAACTGCGATATCTGCCTCGACCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCACGCAAAGCCTTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATTGGTTATGTGGTGGAAGTGCTGCGCGGCATGCAAAACATCCGCATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGTATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCGCTGCTGCGCGG
TGAAATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGTAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• DEAD/DEAH box helicase (DEAD) (33-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394