Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   Q7653_RS07335 Genome accession   NZ_CP131616
Coordinates   1400830..1404033 (-) Length   1067 a.a.
NCBI ID   WP_341948065.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020C08-294     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395830..1409033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7653_RS07315 (Q7653_07400) mtrC 1396435..1397673 (-) 1239 WP_003693766.1 multidrug efflux RND transporter periplasmic adaptor subunit MtrC -
  Q7653_RS07320 (Q7653_07405) mtrR 1397970..1398557 (+) 588 WP_123768208.1 multidrug efflux system transcriptional repressor MtrR -
  Q7653_RS07325 (Q7653_07410) - 1398650..1398862 (-) 213 WP_050169387.1 hypothetical protein -
  Q7653_RS07330 (Q7653_07415) mtrF 1399194..1400762 (+) 1569 WP_050164143.1 AbgT family antimetabolite efflux transporter MtrF -
  Q7653_RS07335 (Q7653_07420) recC 1400830..1404033 (-) 3204 WP_341948065.1 exodeoxyribonuclease V subunit gamma Machinery gene
  Q7653_RS07340 (Q7653_07425) - 1404134..1405543 (-) 1410 WP_003693752.1 PepSY domain-containing protein -
  Q7653_RS07345 (Q7653_07430) - 1405887..1406227 (-) 341 Protein_1428 cytochrome c5 family protein -
  Q7653_RS07350 (Q7653_07435) ccoP 1406342..1407205 (-) 864 Protein_1429 cytochrome-c oxidase, cbb3-type subunit III -
  Q7653_RS07355 (Q7653_07440) - 1407229..1407399 (-) 171 WP_003693747.1 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone -
  Q7653_RS07360 (Q7653_07445) ccoO 1407404..1408015 (-) 612 WP_002212596.1 cytochrome-c oxidase, cbb3-type subunit II -

Sequence

Protein


Download         Length: 1067 a.a.        Molecular weight: 119706.24 Da        Isoelectric Point: 4.7652

>NTDB_id=862803 Q7653_RS07335 WP_341948065.1 1400830..1404033(-) (recC) [Neisseria gonorrhoeae strain 2020C08-294]
MFYLYQSNRLESLAALFARIQKVKPLKCALQPEQIVVQSQGMRRYLNTCLARDLGVAANLAFSLPAGLTWKLMKKLIPGI
PELSPFAPEVMRWRLLDLFRSAEFQNGAEFEDVRNVLQDYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQQGRILG
LGDDEIWQSKLWRYLDDGRQSAPHRVALWEKLLAALDKDKLPERYFVFGISTMAPMYLQLLHKLSEHCDVFVFALNPSGM
HWGNVIEAAQILKGGGDPDLTQAGHPLLASLGKQGRDFFDFLNEMEIEGETPVFEEGGRDTLLHALQTDIQNLKMPSENV
GSVNTGDGSIRIVSAHSPLRELQILKDKLLKILHEHPDWQPHDIAVLTPNIEPYTPFIEAVFGQAQPGAQALPYSVSDVK
ISRRQPFFYALECVSDLLESRFEVGKVLALLETAPVLRRFGLTGDDLPLLHDMVADLNVRWGLDGEMRGGTDQLFTWKQA
ADRMILGWMLPEGGNPMWQDVSAWYADVNQTAMFGRFAAFLETLSDIARIWRQPATVGEWVARCRDLLETLFQAGPDDQK
AVQNLENEWVKWQAETELAQFSGQLPQQTVIRHIRRFLDSESEAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRN
TKAAVFDLVAKHPAKGDRARRDDDRYLFLEALISAREILYLSYIGRDIRKDEELASSSLLGELIDTVAAMAGIGSRQLAQ
NWIEQHPLQAFSRRYFQEGGRSDGIFGTRTDYAAALGQTPEPPQPFFDQPVENAEPVAEIGQDEFIRFWRNPVKVWLQQL
AWSEPHIGEAWEPAEPFEPQHAEQIAETYIGARREGQDFSQTAARIAAESLLPSGELGKLWQQSFQTAAKQIDTAVLNSP
KLPPFPYAIPSDGQILTGSLSNLYQCGQVFYAYGKPNAPQRIAFLLEHLIFCAVMPSEAETRQTFIVQSGETEVLAEIAQ
DRALQLLSEWMAFFNIGQNRPLPFFAKTSLAAAEALAAKPDWDAALKKARTAYYGSKVSKGQKDYTEVTLVFGGGEEPLE
QPLFENLARLLADTLAAAEKKEEAGAA

Nucleotide


Download         Length: 3204 bp        

>NTDB_id=862803 Q7653_RS07335 WP_341948065.1 1400830..1404033(-) (recC) [Neisseria gonorrhoeae strain 2020C08-294]
ATGTTTTACCTGTACCAATCCAACCGCCTCGAATCGCTCGCTGCACTGTTTGCCCGCATTCAAAAAGTCAAACCGCTGAA
ATGTGCCTTGCAGCCCGAACAGATTGTTGTGCAGAGCCAGGGGATGCGCCGCTACCTCAACACCTGCCTCGCCCGCGATT
TGGGCGTGGCGGCGAATTTGGCGTTCAGCCTGCCCGCCGGCCTGACGTGGAAGTTGATGAAAAAACTGATTCCCGGTATT
CCGGAACTCAGCCCGTTTGCACCCGAAGTCATGCGCTGGCGGCTGCTGGATTTGTTCCGCAGCGCAGAATTTCAAAACGG
AGCGGAATTTGAAGATGTGAGGAATGTGCTGCAAGACTATCTGGGCAGCGGAGAATCGGCGGATTACCAGCTTGCGGGAC
AGCTTGCAGACATATTCGACCAATACCTCGTGTACCGTCCTCAGTGGATAGACGCTTGGCAGCAGGGCAGGATACTCGGT
TTGGGCGACGACGAAATCTGGCAGTCCAAACTGTGGCGTTACCTCGACGACGGCAGGCAGAGCGCGCCGCACCGTGTCGC
GTTGTGGGAAAAACTGCTTGCCGCGTTGGACAAGGATAAGCTGCCCGAGCGTTATTTCGTGTTCGGCATTTCCACGATGG
CGCCGATGTATTTGCAGCTTTTGCACAAGCTGTCCGAACATTGCGACGTGTTCGTGTTCGCACTCAATCCGAGCGGGATG
CATTGGGGCAACGTCATCGAAGCGGCGCAAATCCTCAAAGGCGGCGGCGATCCCGATCTGACGCAGGCAGGGCATCCGCT
GCTTGCCTCATTGGGCAAGCAGGGGCGCGACTTTTTCGACTTTTTGAACGAAATGGAAATAGAAGGCGAAACGCCGGTAT
TTGAAGAAGGCGGGCGCGATACGCTTTTGCACGCCCTGCAAACCGATATTCAAAACCTGAAAATGCCGTCTGAAAATGTG
GGAAGCGTCAACACGGGCGACGGCTCGATACGCATCGTCTCCGCACACAGCCCTTTGCGCGAATTGCAGATACTCAAAGA
CAAGCTGTTGAAAATTCTGCATGAACATCCCGATTGGCAGCCGCATGATATCGCCGTATTAACCCCGAACATCGAACCCT
ATACGCCTTTTATCGAAGCCGTGTTCGGACAGGCGCAGCCCGGCGCGCAGGCATTGCCGTATTCCGTTTCGGACGTGAAA
ATCAGCCGCCGGCAACCGTTTTTTTATGCGTTGGAGTGCGTGTCCGACTTGCTGGAAAGCCGTTTTGAAGTCGGCAAAGT
GCTCGCGCTTTTGGAAACCGCGCCCGTGTTGCGCCGTTTCGGACTGACCGGGGACGATTTACCGCTTTTGCACGACATGG
TTGCCGATTTGAACGTCCGCTGGGGTTTGGACGGAGAAATGCGCGGCGGCACGGATCAGCTGTTTACCTGGAAGCAGGCG
GCAGACCGTATGATATTGGGCTGGATGCTGCCCGAAGGCGGCAACCCGATGTGGCAGGATGTCAGCGCGTGGTATGCCGA
CGTGAATCAAACCGCCATGTTCGGACGTTTTGCCGCCTTCCTCGAAACCCTGTCGGATATTGCCCGGATATGGCGGCAAC
CTGCGACGGTCGGCGAATGGGTGGCGCGTTGCCGGGATTTGCTTGAAACATTGTTTCAAGCCGGGCCCGATGACCAAAAG
GCAGTCCAAAACCTCGAAAACGAATGGGTCAAATGGCAGGCGGAAACCGAATTGGCGCAATTTTCCGGACAGTTGCCGCA
ACAAACCGTCATCCGCCATATCCGACGTTTCCTCGACAGCGAAAGCGAGGCAGGCTTTTTACGCGGCGGCATCACCTTTT
GCAGTATGGTGCCGATGCGCAGCCTGCCCTTTAAAGTCATCTGCCTGTTGGGTTTGAACGACGGAGATTTTCCCCGCAAT
ACCAAAGCCGCCGTATTCGACCTGGTTGCCAAACATCCCGCCAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCT
CTTCCTCGAAGCCCTCATCAGCGCGCGCGAAATCCTGTATTTGTCCTACATCGGGCGCGACATCCGCAAAGACGAAGAAC
TGGCTTCGTCTTCCCTGTTGGGCGAACTCATCGATACCGTTGCCGCTATGGCGGGCATTGGTAGCCGCCAACTTGCACAA
AATTGGATAGAACAGCATCCGCTGCAAGCCTTCTCGCGCCGATATTTCCAAGAAGGCGGACGTTCAGACGGCATATTCGG
CACGCGTACCGACTACGCCGCCGCGCTCGGACAAACGCCCGAACCGCCGCAACCCTTTTTCGACCAACCCGTAGAAAACG
CCGAACCTGTTGCCGAAATCGGACAGGACGAATTTATCCGCTTCTGGCGCAACCCCGTCAAAGTATGGCTGCAGCAGCTT
GCGTGGAGCGAACCCCATATCGGCGAAGCCTGGGAGCCTGCCGAACCCTTCGAGCCGCAACACGCGGAGCAAATCGCCGA
AACCTATATCGGGGCGCGCCGCGAAGGACAAGATTTTTCCCAAACCGCCGCCCGTATCGCGGCGGAAAGCCTGCTGCCTT
CCGGAGAATTGGGAAAACTTTGGCAGCAGTCCTTCCAAACCGCCGCCAAACAAATCGACACGGCGGTTTTAAACAGCCCC
AAACTGCCCCCGTTTCCATACGCCATACCGTCGGACGGGCAAATCCTGACCGGCAGTTTGAGCAATTTATACCAATGCGG
ACAAGTGTTTTATGCCTACGGCAAACCCAACGCGCCGCAACGTATCGCTTTTTTGTTGGAACACCTGATATTTTGCGCCG
TTATGCCGTCTGAAGCCGAAACGCGGCAAACCTTTATCGTCCAATCCGGAGAAACAGAAGTATTGGCGGAAATCGCGCAA
GACAGGGCATTGCAGCTGTTGTCGGAATGGATGGCGTTTTTCAATATCGGGCAAAACCGCCCGCTGCCGTTTTTTGCCAA
AACCTCGCTTGCCGCCGCCGAAGCATTGGCGGCAAAACCGGATTGGGATGCGGCACTGAAAAAAGCCCGAACCGCCTACT
ACGGCAGCAAAGTCAGCAAAGGTCAGAAAGACTATACCGAAGTCACCCTCGTTTTCGGCGGAGGGGAAGAACCGCTCGAA
CAGCCCCTGTTTGAAAACCTCGCCCGCCTGCTTGCCGACACACTTGCCGCAGCGGAAAAAAAGGAAGAGGCCGGAGCAGC
ATAA

Domains

Predicted by InterproScan.

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-312)

RecC C-terminal domain (RecC_C)

(778-996)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

97.097

100

0.972