Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | Q7653_RS04315 | Genome accession | NZ_CP131616 |
| Coordinates | 839557..841302 (+) | Length | 581 a.a. |
| NCBI ID | WP_003691195.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 2020C08-294 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 804440..879431 | 839557..841302 | within | 0 |
| IS/Tn | 841989..842990 | 839557..841302 | flank | 687 |
Gene organization within MGE regions
Location: 804440..879431
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q7653_RS04145 (Q7653_04215) | - | 804440..805441 (-) | 1002 | WP_308475503.1 | integrase arm-type DNA-binding domain-containing protein | - |
| Q7653_RS04150 (Q7653_04220) | - | 805650..806429 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| Q7653_RS04155 (Q7653_04225) | - | 807021..807230 (-) | 210 | WP_003688699.1 | hypothetical protein | - |
| Q7653_RS04160 (Q7653_04230) | dinB | 807329..808387 (+) | 1059 | WP_041421282.1 | DNA polymerase IV | - |
| Q7653_RS04165 (Q7653_04235) | rep | 808457..810472 (-) | 2016 | WP_003704006.1 | DNA helicase Rep | - |
| Q7653_RS04170 (Q7653_04240) | aroD | 810492..811256 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| Q7653_RS04175 (Q7653_04245) | recA | 811456..812502 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| Q7653_RS04180 (Q7653_04250) | - | 813155..813490 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| Q7653_RS04185 (Q7653_04255) | dnaX | 813571..815694 (-) | 2124 | WP_003701346.1 | DNA polymerase III subunit gamma/tau | - |
| Q7653_RS04190 (Q7653_04260) | mutL | 815789..817765 (-) | 1977 | WP_048339620.1 | DNA mismatch repair endonuclease MutL | - |
| Q7653_RS04195 (Q7653_04265) | - | 817909..818094 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| Q7653_RS04200 (Q7653_04270) | - | 818105..818773 (+) | 669 | WP_003688686.1 | O-methyltransferase | - |
| Q7653_RS04205 (Q7653_04275) | - | 818773..819486 (+) | 714 | WP_003697104.1 | tol-pal system YbgF family protein | - |
| Q7653_RS04210 (Q7653_04280) | purE | 819534..820019 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| Q7653_RS04215 (Q7653_04285) | - | 820231..821041 (-) | 811 | Protein_823 | transposase | - |
| Q7653_RS04220 (Q7653_04290) | - | 821414..821779 (+) | 366 | Protein_824 | transposase | - |
| Q7653_RS04225 (Q7653_04295) | - | 821942..822850 (+) | 909 | WP_003688683.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| Q7653_RS04230 (Q7653_04300) | - | 823006..823662 (-) | 657 | WP_003697102.1 | response regulator transcription factor | - |
| Q7653_RS04235 (Q7653_04305) | - | 823659..825428 (-) | 1770 | WP_003688681.1 | histidine kinase | - |
| Q7653_RS04240 (Q7653_04310) | - | 825635..826249 (+) | 615 | WP_003691204.1 | molybdenum cofactor guanylyltransferase | - |
| Q7653_RS04245 (Q7653_04315) | - | 826412..827029 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| Q7653_RS04250 (Q7653_04320) | - | 827037..827900 (+) | 864 | WP_003688678.1 | ATP-binding protein | - |
| Q7653_RS04255 (Q7653_04325) | - | 827913..828347 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| Q7653_RS04260 (Q7653_04330) | rpe | 828493..829176 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| Q7653_RS04265 (Q7653_04335) | ruvB | 829421..830452 (-) | 1032 | WP_003691202.1 | Holliday junction branch migration DNA helicase RuvB | - |
| Q7653_RS04270 (Q7653_04340) | - | 830534..830842 (-) | 309 | WP_003688671.1 | hypothetical protein | - |
| Q7653_RS04275 (Q7653_04345) | - | 831261..832493 (-) | 1233 | WP_003688669.1 | multifunctional CCA addition/repair protein | - |
| Q7653_RS04280 (Q7653_04350) | - | 832572..834200 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| Q7653_RS04285 (Q7653_04355) | - | 834350..834724 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| Q7653_RS04290 (Q7653_04360) | - | 834773..836311 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| Q7653_RS04295 (Q7653_04365) | recR | 836378..836995 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| Q7653_RS04300 (Q7653_04370) | - | 837051..837329 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| Q7653_RS04305 (Q7653_04375) | - | 837555..838802 (+) | 1248 | WP_003691197.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| Q7653_RS04310 (Q7653_04380) | lolD | 838795..839490 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| Q7653_RS04315 (Q7653_04385) | recD | 839557..841302 (+) | 1746 | WP_003691195.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| Q7653_RS04320 (Q7653_04390) | - | 841374..842020 (-) | 647 | Protein_844 | class I SAM-dependent methyltransferase | - |
| Q7653_RS04325 (Q7653_04395) | - | 842028..842990 (+) | 963 | WP_341944779.1 | IS110-like element ISNgo2 family transposase | - |
| Q7653_RS04330 (Q7653_04400) | - | 843123..843578 (-) | 456 | Protein_846 | methyltransferase | - |
| Q7653_RS04335 (Q7653_04405) | lon | 843830..846292 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| Q7653_RS04340 (Q7653_04410) | - | 846474..846743 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| Q7653_RS04345 (Q7653_04415) | - | 846919..847353 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| Q7653_RS04350 (Q7653_04420) | - | 847346..848653 (-) | 1308 | WP_003688637.1 | homoserine dehydrogenase | - |
| Q7653_RS04355 (Q7653_04425) | - | 848849..849220 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| Q7653_RS04360 (Q7653_04430) | - | 849297..851219 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| Q7653_RS04365 (Q7653_04435) | - | 851206..851601 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| Q7653_RS04370 (Q7653_04440) | - | 851692..852204 (+) | 513 | WP_003688633.1 | hypothetical protein | - |
| Q7653_RS04375 (Q7653_04445) | - | 852634..853329 (-) | 696 | WP_041421278.1 | DUF4400 domain-containing protein | - |
| Q7653_RS04380 (Q7653_04450) | traD | 853319..855361 (-) | 2043 | WP_012503640.1 | type IV conjugative transfer system coupling protein TraD | - |
| Q7653_RS04385 (Q7653_04455) | mobH | 855358..857910 (-) | 2553 | WP_012503639.1 | MobH family relaxase | - |
| Q7653_RS04390 (Q7653_04460) | - | 857907..858326 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| Q7653_RS04395 (Q7653_04465) | - | 858837..859298 (+) | 462 | WP_012503638.1 | lytic transglycosylase domain-containing protein | - |
| Q7653_RS04400 (Q7653_04470) | - | 859268..859789 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| Q7653_RS04405 (Q7653_04475) | traA | 859845..860141 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| Q7653_RS04410 (Q7653_04480) | traL | 860163..860444 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| Q7653_RS04415 (Q7653_04485) | - | 860441..861106 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| Q7653_RS04420 (Q7653_04490) | - | 861108..861842 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| Q7653_RS04425 (Q7653_04495) | - | 861844..863157 (+) | 1314 | WP_003697090.1 | TrbI/VirB10 family protein | - |
| Q7653_RS04430 (Q7653_04500) | - | 863167..863886 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| Q7653_RS04435 (Q7653_04505) | - | 863883..864464 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| Q7653_RS04440 (Q7653_04510) | traC | 864474..867050 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| Q7653_RS04445 (Q7653_04515) | - | 867078..867626 (+) | 549 | WP_003695274.1 | hypothetical protein | - |
| Q7653_RS04450 (Q7653_04520) | - | 867626..868171 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| Q7653_RS04455 (Q7653_04525) | - | 868180..868836 (+) | 657 | WP_003693128.1 | hypothetical protein | - |
| Q7653_RS04460 (Q7653_04530) | - | 868833..869951 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| Q7653_RS04465 (Q7653_04535) | trbC | 869966..870718 (+) | 753 | WP_003699946.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| Q7653_RS04470 (Q7653_04540) | - | 870715..871959 (+) | 1245 | WP_003695263.1 | hypothetical protein | - |
| Q7653_RS04475 (Q7653_04545) | traN | 871998..873539 (+) | 1542 | WP_226876101.1 | conjugal transfer protein TraN | - |
| Q7653_RS04480 (Q7653_04550) | - | 873526..873951 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| Q7653_RS04485 (Q7653_04555) | - | 873963..874739 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| Q7653_RS04490 (Q7653_04560) | - | 874911..876422 (+) | 1512 | WP_041421275.1 | conjugal transfer protein TraH | - |
| Q7653_RS04495 (Q7653_04565) | - | 876429..879431 (+) | 3003 | WP_012503630.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63097.87 Da Isoelectric Point: 5.8825
>NTDB_id=862797 Q7653_RS04315 WP_003691195.1 839557..841302(+) (recD) [Neisseria gonorrhoeae strain 2020C08-294]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=862797 Q7653_RS04315 WP_003691195.1 839557..841302(+) (recD) [Neisseria gonorrhoeae strain 2020C08-294]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGTTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCTATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGTTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAATGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCTATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.656 |
100 |
0.997 |