Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   Q5709_RS12800 Genome accession   NZ_CP131483
Coordinates   2707990..2708871 (-) Length   293 a.a.
NCBI ID   WP_248133714.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2702990..2713871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS12780 (Q5709_12785) miaB 2704421..2705878 (+) 1458 WP_005018411.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  Q5709_RS12785 (Q5709_12790) - 2705917..2707014 (+) 1098 WP_005018410.1 PhoH family protein -
  Q5709_RS12790 (Q5709_12795) ybeY 2707023..2707502 (+) 480 WP_248133712.1 rRNA maturation RNase YbeY -
  Q5709_RS12795 (Q5709_12800) - 2707552..2707974 (+) 423 WP_248133713.1 hypothetical protein -
  Q5709_RS12800 (Q5709_12805) tonB2 2707990..2708871 (-) 882 WP_248133714.1 energy transducer TonB Machinery gene
  Q5709_RS12805 (Q5709_12810) - 2709115..2709795 (+) 681 WP_005024481.1 hypothetical protein -
  Q5709_RS12810 (Q5709_12815) - 2709963..2710676 (+) 714 WP_248133715.1 DUF3108 domain-containing protein -
  Q5709_RS12815 (Q5709_12820) - 2710769..2711344 (+) 576 WP_005407147.1 xanthine phosphoribosyltransferase -
  Q5709_RS12820 (Q5709_12825) wrbA 2711383..2711976 (-) 594 WP_005018403.1 NAD(P)H:quinone oxidoreductase -
  Q5709_RS12825 (Q5709_12830) - 2712089..2713333 (+) 1245 WP_416393852.1 YhjD/YihY/BrkB family envelope integrity protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32994.55 Da        Isoelectric Point: 9.1172

>NTDB_id=862647 Q5709_RS12800 WP_248133714.1 2707990..2708871(-) (tonB2) [Acinetobacter radioresistens strain MC-14]
MLKKIILPGGTGLAWWQDPIFMGALLLAVILHSAILTLHFAMPNPEPAASKEIAVSIRPSSEQVKDADYLAQADQQGSGR
FREAHRISSQLPASSQQQSAGEQQQETLQQMHQQPQIQFEDKVLMTIMSWRKEAEQNQRKKALEELQSQFQAKAAMAASL
EAQYLQRQQDFSRQQRIKTVDGIQAKQDAAAAYLDKFREKVELYGNRYYPQQAKAERLTGEVQLMVILNAQGGIRAIRLL
ESSGYTSLDEAAKASVRKGAPFGRFDAGMKDISELRIVRTWRFDPAEAEFEVK

Nucleotide


Download         Length: 882 bp        

>NTDB_id=862647 Q5709_RS12800 WP_248133714.1 2707990..2708871(-) (tonB2) [Acinetobacter radioresistens strain MC-14]
ATGTTGAAAAAAATAATTTTACCTGGTGGGACAGGTCTGGCTTGGTGGCAGGATCCGATTTTTATGGGTGCTCTGTTGCT
GGCTGTCATTTTACATTCGGCGATTTTAACTCTGCATTTTGCAATGCCAAATCCAGAGCCTGCTGCCAGTAAGGAAATCG
CTGTCAGCATTCGTCCGAGTTCTGAGCAGGTCAAAGATGCCGACTATCTGGCACAGGCAGACCAGCAGGGTTCAGGCCGC
TTTCGAGAGGCTCACCGTATCTCAAGCCAGCTACCGGCCAGTTCACAACAACAGAGTGCGGGTGAGCAGCAGCAGGAGAC
TTTACAGCAGATGCACCAACAGCCTCAAATACAGTTTGAAGACAAAGTTCTGATGACAATCATGAGCTGGCGCAAAGAAG
CGGAGCAGAACCAGCGTAAAAAAGCTTTAGAAGAATTACAGAGCCAGTTTCAGGCCAAGGCAGCAATGGCTGCCAGTCTG
GAAGCCCAGTATTTACAGCGTCAGCAGGATTTCAGCCGTCAGCAACGTATCAAAACGGTGGATGGAATTCAGGCCAAGCA
GGATGCAGCAGCTGCCTATCTGGACAAGTTCCGTGAAAAAGTTGAACTCTATGGTAATCGCTATTATCCGCAGCAGGCTA
AGGCTGAGCGCCTAACAGGAGAAGTGCAGCTTATGGTCATCCTGAATGCTCAAGGCGGGATACGTGCAATCCGGTTGCTG
GAAAGTTCAGGATATACCAGTCTAGATGAGGCAGCTAAGGCTTCTGTACGTAAAGGTGCGCCATTTGGGCGGTTTGATGC
AGGTATGAAAGATATTTCTGAACTACGCATTGTACGGACGTGGCGATTCGACCCAGCCGAGGCTGAATTCGAAGTAAAAT
AA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(206-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.014

100

0.72