Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   Q5709_RS05980 Genome accession   NZ_CP131483
Coordinates   1276038..1276991 (+) Length   317 a.a.
NCBI ID   WP_005014758.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1271038..1281991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS05965 (Q5709_05970) - 1273109..1274353 (+) 1245 WP_005014762.1 PD-(D/E)XK nuclease family protein -
  Q5709_RS05970 (Q5709_05975) - 1274757..1274975 (+) 219 WP_034433134.1 hypothetical protein -
  Q5709_RS05975 (Q5709_05980) - 1275100..1275585 (-) 486 WP_005014761.1 Lrp/AsnC family transcriptional regulator -
  Q5709_RS05980 (Q5709_05985) ceuB 1276038..1276991 (+) 954 WP_005014758.1 ABC transporter permease Machinery gene
  Q5709_RS05985 (Q5709_05990) - 1276984..1277946 (+) 963 WP_005014756.1 iron chelate uptake ABC transporter family permease subunit -
  Q5709_RS05990 (Q5709_05995) - 1277931..1278695 (+) 765 WP_005014752.1 ABC transporter ATP-binding protein -
  Q5709_RS05995 (Q5709_06000) - 1278705..1279652 (+) 948 WP_005014751.1 siderophore ABC transporter substrate-binding protein -
  Q5709_RS06000 (Q5709_06005) - 1279953..1281161 (-) 1209 WP_005014749.1 MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34632.84 Da        Isoelectric Point: 9.6461

>NTDB_id=862636 Q5709_RS05980 WP_005014758.1 1276038..1276991(+) (ceuB) [Acinetobacter radioresistens strain MC-14]
MIKRRYLFLLLVPLAVISLFTGVGEMNIAGLLAGNIHEWQLFWTSRLPRLMAILVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLISIILLPAASIFIKTGFAILVTLIGALIFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQNLAGWLQGDFSTILNGQYELIYLSVPILIVSYFLANRFVLAGIGEDFATNLGLNYKQTLFLGLILVSVITGVVIVTVG
AIPFLGLIVPNIVSLYLGDNIRKTLSHTAILGALLVLVCDLFGRIVIYPYEVSVSLIMGVLGSVLFLWLLLRRYRYA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=862636 Q5709_RS05980 WP_005014758.1 1276038..1276991(+) (ceuB) [Acinetobacter radioresistens strain MC-14]
ATGATTAAACGTCGTTACCTGTTTCTTTTGCTTGTTCCTCTTGCTGTTATTTCGTTATTTACAGGTGTGGGAGAAATGAA
TATTGCCGGATTGCTAGCAGGAAATATTCATGAATGGCAATTATTCTGGACCAGCCGTTTGCCACGCTTAATGGCCATTT
TAGTTGCAGGTGCAGGGCTGAGTGTTTGTGGGCTGATTATGCAGTCGCTCAGCCGGAACCGTTTTGTTTCCCCAACTACA
GCCGGTCTTTATGATTGTGCCCGGTTAGGTGTTCTCATCTCGATTATCCTGCTGCCAGCCGCTTCTATCTTTATTAAAAC
CGGTTTTGCAATTTTAGTTACATTGATCGGTGCATTGATTTTTATGAGCATTCTAGCCACACTCAAGCATCGGGATACCG
TTTTTGTTCCTCTGGTTGGTATGATCTTTGGCAGTATCATTTCTGCATTTACGACTTTTATCGCTTTGCAAATGGACTTG
CTACAAAATCTGGCGGGGTGGTTACAGGGAGACTTTTCAACCATTCTAAATGGTCAATATGAGCTGATCTATTTAAGTGT
ACCCATTTTAATAGTGAGTTATTTTCTGGCCAACCGCTTTGTCCTGGCAGGTATCGGGGAAGACTTTGCAACTAATTTAG
GTCTCAATTATAAACAGACCTTATTTTTAGGACTAATTCTGGTATCTGTCATTACTGGTGTAGTCATCGTCACAGTTGGA
GCTATCCCATTCTTAGGTTTGATTGTTCCCAATATTGTAAGTCTGTATCTCGGAGATAACATCCGCAAGACTTTATCGCA
TACTGCAATTTTAGGGGCTTTACTGGTACTGGTCTGTGATCTGTTTGGACGTATAGTTATTTACCCGTACGAAGTTTCAG
TAAGCCTGATTATGGGTGTACTGGGCAGTGTGCTTTTCTTGTGGCTCTTGCTACGGAGGTACCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.118

98.738

0.505