Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   Q5709_RS01420 Genome accession   NZ_CP131483
Coordinates   311813..314038 (-) Length   741 a.a.
NCBI ID   WP_005016910.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306813..319038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS01400 (Q5709_01400) - 307077..308030 (-) 954 WP_005016920.1 DnaJ C-terminal domain-containing protein -
  Q5709_RS01405 (Q5709_01405) - 308186..308647 (-) 462 WP_005016918.1 DUF2147 domain-containing protein -
  Q5709_RS01410 (Q5709_01410) - 308972..309847 (-) 876 WP_005016915.1 Hsp33 family molecular chaperone HslO -
  Q5709_RS01415 (Q5709_01415) - 309897..311729 (-) 1833 WP_005016912.1 cation:proton antiporter -
  Q5709_RS01420 (Q5709_01420) priA 311813..314038 (-) 2226 WP_005016910.1 primosomal protein N' Machinery gene
  Q5709_RS01425 (Q5709_01425) gspF 314194..315399 (+) 1206 WP_005016908.1 type II secretion system inner membrane protein GspF -
  Q5709_RS01430 (Q5709_01430) gspG 315436..315873 (+) 438 WP_005016907.1 type II secretion system major pseudopilin GspG -
  Q5709_RS01435 (Q5709_01435) - 316210..316545 (+) 336 WP_005016905.1 hypothetical protein -
  Q5709_RS01440 (Q5709_01440) lnt 316623..318182 (-) 1560 WP_005016902.1 apolipoprotein N-acyltransferase -
  Q5709_RS01445 (Q5709_01445) - 318179..319018 (-) 840 WP_005016900.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84176.40 Da        Isoelectric Point: 9.1601

>NTDB_id=862628 Q5709_RS01420 WP_005016910.1 311813..314038(-) (priA) [Acinetobacter radioresistens strain MC-14]
MPSSSHNNCCIYRVRVAVPVHLYDSFDYLLSAEQYLQAEVGARVAVSFGRQNLIGIIVEKISPDVMPDPRIKLKAITELL
DKEAIIDSKVLSLLTWSAQYYQFPLGEVMQCALPGLLRQGKPLNLLARVWKVVQPDAEQLLKRSIKQQDAYKILKLHAAG
TTEDILNLSGVETATLKALEKKEIVRCELTAINTTPEPVQLAQMPLTPNEDQHKAIQRILKSLKKFQAFLLDGLTGSGKT
EVYLQVMYEVLKQGKQILVLVPEIGLTPQTISRFKSRFNVDIVLLHSGLSESKRLQAWQHAQTGKASIILGTRSAIYTSL
PRLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSLDSYHLVEQNKLTRLELNQRAGNAVLPKMQL
IDLKVAKKQHGISEQLIKQIQQRLDKKEQVLVFLNRRGYAPVLVCNHCGWQANCPHCDAHFTLHTQPYNHLHCHHCGSIH
RVPESCPECQQTTLKTLGMGTAKVEETLTELFPDFDVIRVDRDSTSRVGQWDRIYQRIHQSQPAILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSFDFRAPERTAQLIIQVAGRAGRGDRRGEVYLQTLRPDHPLLTTLIEKDYRAFAKQALIERQQAQL
PPYRYTVLVRADSRNQQYSQEFLAEIARKLRELAGSQVDIWGPIPAPMERKAGRYRAHLVLLSADRAQLHFYLRQWWAMV
VQQPRQHQLKLSIDVDPQELS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=862628 Q5709_RS01420 WP_005016910.1 311813..314038(-) (priA) [Acinetobacter radioresistens strain MC-14]
ATGCCTAGCTCGTCCCATAATAACTGCTGTATATACCGTGTCCGGGTAGCTGTACCTGTTCATCTCTATGATAGTTTTGA
CTATCTGCTTAGTGCCGAACAATATCTACAGGCAGAAGTCGGTGCGCGGGTAGCAGTATCTTTTGGACGGCAGAATCTGA
TTGGTATCATTGTAGAGAAAATTTCTCCCGATGTTATGCCTGATCCGCGTATCAAACTTAAGGCTATTACTGAGCTGCTC
GACAAGGAAGCCATTATAGACAGCAAAGTTTTAAGTTTGTTGACATGGTCTGCCCAGTATTATCAGTTTCCTTTGGGTGA
GGTAATGCAATGTGCTCTACCCGGCCTGTTGCGTCAGGGTAAACCGCTAAATCTGCTGGCTCGAGTCTGGAAGGTGGTAC
AGCCTGATGCAGAACAGCTGCTCAAGCGTTCAATCAAGCAGCAAGATGCTTATAAGATTTTAAAATTACATGCAGCTGGT
ACAACAGAAGATATTCTGAATTTAAGTGGTGTTGAAACTGCCACTTTAAAAGCTCTTGAAAAAAAAGAAATTGTCCGCTG
TGAATTAACAGCAATAAATACCACGCCTGAACCGGTGCAGCTGGCACAAATGCCGCTCACCCCCAATGAAGATCAGCACA
AAGCAATTCAGCGTATTTTAAAATCCTTGAAGAAATTTCAGGCCTTCTTACTTGATGGTTTGACTGGTAGCGGCAAAACA
GAAGTTTATTTGCAGGTGATGTATGAGGTACTAAAACAGGGCAAGCAGATATTGGTTCTGGTTCCCGAAATCGGGTTGAC
ACCTCAAACCATTTCCCGGTTTAAATCACGGTTTAATGTAGATATTGTACTATTACATTCTGGTTTGAGTGAATCCAAAC
GTTTGCAAGCATGGCAGCATGCCCAAACCGGCAAGGCTTCCATTATTCTCGGAACCCGTTCAGCAATTTATACGTCGTTG
CCCCGGCTGGGACTGATTATTCTGGATGAGGAGCATGATCTGTCATTCAAGCAACAGGAAGGCTTTCGCTACCATGCCCG
TGACGTAGCTCTCTACCGTGCCCATCTGGAAAACTGTCCGATTATTCTTGGCTCAGCCACACCCAGTCTGGATAGCTATC
ATCTGGTAGAACAGAATAAACTGACACGACTGGAACTTAACCAGCGGGCTGGTAATGCGGTCTTACCCAAAATGCAGTTA
ATAGATCTGAAAGTAGCCAAAAAACAGCATGGAATCAGTGAACAGCTCATCAAGCAGATTCAGCAGCGGCTGGACAAAAA
AGAACAGGTGCTGGTTTTTTTAAACCGGCGTGGTTATGCACCGGTGCTGGTCTGTAATCATTGTGGCTGGCAGGCCAACT
GCCCCCATTGTGATGCACATTTTACTCTGCATACACAGCCCTATAATCATCTGCACTGTCATCATTGTGGTTCCATTCAT
CGTGTACCGGAAAGCTGTCCCGAATGTCAGCAAACGACCTTAAAAACGCTCGGGATGGGCACTGCCAAGGTTGAAGAAAC
CCTAACCGAGCTCTTTCCAGATTTTGATGTAATTCGTGTGGACCGTGACAGTACCAGCCGGGTTGGCCAATGGGACCGTA
TCTATCAACGGATTCATCAAAGCCAGCCTGCTATTTTGCTGGGTACCCAAATGTTAGCCAAGGGCCATCATTTTCCCTAC
GTGACCTTGGTTGCGATTCTGGATATTGATGCCGGACTGCTCAGCTTTGATTTTCGTGCGCCGGAACGTACAGCCCAGCT
CATCATTCAGGTGGCTGGTCGCGCTGGCCGTGGAGACCGCAGGGGCGAAGTCTATCTGCAAACATTAAGGCCTGATCATC
CACTGTTAACTACATTGATCGAGAAAGACTACCGTGCTTTTGCCAAACAAGCACTCATCGAGCGCCAGCAGGCACAGCTG
CCGCCTTATCGTTATACGGTACTGGTACGAGCCGACTCCAGAAACCAGCAATACAGTCAGGAATTTTTAGCTGAAATTGC
TCGTAAGCTACGTGAACTTGCAGGTAGTCAGGTTGATATCTGGGGCCCTATCCCTGCCCCTATGGAGCGTAAGGCGGGTC
GCTACCGGGCCCATCTGGTCCTGCTTTCAGCTGACCGGGCACAGCTGCATTTTTATTTACGGCAATGGTGGGCGATGGTA
GTACAACAGCCACGACAGCATCAGTTAAAGCTGAGTATCGACGTTGACCCGCAGGAACTCAGCTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(207-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

75.918

99.19

0.753