Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   Q5709_RS00965 Genome accession   NZ_CP131483
Coordinates   207694..208020 (+) Length   108 a.a.
NCBI ID   WP_005017085.1    Uniprot ID   A0A062BQE3
Organism   Acinetobacter radioresistens strain MC-14     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 202694..213020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS00940 (Q5709_00940) hemC 203324..204244 (+) 921 WP_034430615.1 hydroxymethylbilane synthase -
  Q5709_RS00945 (Q5709_00945) - 204250..205032 (+) 783 WP_005017096.1 uroporphyrinogen-III synthase -
  Q5709_RS00950 (Q5709_00950) - 205029..205877 (+) 849 WP_005017093.1 hypothetical protein -
  Q5709_RS00955 (Q5709_00955) - 205887..207080 (+) 1194 WP_005017091.1 membrane protein -
  Q5709_RS00960 (Q5709_00960) - 207090..207527 (+) 438 WP_005017088.1 acyl-CoA thioesterase -
  Q5709_RS00965 (Q5709_00965) hns 207694..208020 (+) 327 WP_005017085.1 H-NS family nucleoid-associated regulatory protein Regulator
  Q5709_RS00970 (Q5709_00970) gspN 208186..208929 (+) 744 WP_005017083.1 type II secretion system protein N -
  Q5709_RS00975 (Q5709_00975) - 208929..209771 (+) 843 WP_005017081.1 type II secretion system protein N -
  Q5709_RS00980 (Q5709_00980) gspD 209813..212068 (+) 2256 WP_005017079.1 type II secretion system secretin GspD -
  Q5709_RS00985 (Q5709_00985) - 212134..212793 (+) 660 WP_005017077.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12369.08 Da        Isoelectric Point: 4.8451

>NTDB_id=862624 Q5709_RS00965 WP_005017085.1 207694..208020(+) (hns) [Acinetobacter radioresistens strain MC-14]
MKPDISELSVEDLKRLQLEAEALIASKKDQAVDEAYEQVLEIAENVGLTIEQLLEFGAQKRKKTTRKSVEPRYRNTENPE
ETWTGRGKQPRWLVAALEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=862624 Q5709_RS00965 WP_005017085.1 207694..208020(+) (hns) [Acinetobacter radioresistens strain MC-14]
ATGAAGCCAGATATTAGTGAACTTTCGGTAGAAGATCTCAAAAGATTACAGCTTGAAGCCGAAGCATTAATCGCCAGCAA
AAAAGATCAAGCAGTAGATGAAGCTTATGAACAGGTTTTAGAAATTGCTGAAAATGTGGGTCTGACTATTGAACAGTTGC
TAGAATTTGGAGCGCAAAAGCGTAAGAAAACAACACGTAAATCAGTAGAGCCACGTTATCGTAATACTGAAAATCCTGAA
GAAACCTGGACAGGACGTGGTAAGCAGCCACGCTGGTTAGTAGCAGCCCTTGAAAAAGGTGCAAAACTTGAAGATTTTCT
GATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852