Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q5O05_RS17360 Genome accession   NZ_CP131477
Coordinates   3859089..3860297 (+) Length   402 a.a.
NCBI ID   WP_085227844.1    Uniprot ID   A0A1X7ER18
Organism   Trinickia caryophylli strain ATCC 25418     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3854089..3865297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5O05_RS17330 (Q5O05_17305) - 3854641..3855252 (+) 612 WP_085228102.1 50S ribosomal protein L25/general stress protein Ctc -
  Q5O05_RS17335 (Q5O05_17310) pth 3855372..3855974 (+) 603 WP_085227849.1 aminoacyl-tRNA hydrolase -
  Q5O05_RS17340 (Q5O05_17315) hisC 3856035..3857105 (+) 1071 WP_085227848.1 histidinol-phosphate transaminase -
  Q5O05_RS17345 (Q5O05_17320) - 3857150..3857410 (-) 261 WP_085227847.1 YfhL family 4Fe-4S dicluster ferredoxin -
  Q5O05_RS17350 (Q5O05_17325) coaD 3857632..3858135 (-) 504 WP_085227846.1 pantetheine-phosphate adenylyltransferase -
  Q5O05_RS17355 (Q5O05_17330) rsmD 3858227..3858841 (-) 615 WP_085227845.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Q5O05_RS17360 (Q5O05_17335) pilA 3859089..3860297 (+) 1209 WP_085227844.1 signal recognition particle-docking protein FtsY Machinery gene
  Q5O05_RS17365 (Q5O05_17340) maiA 3860392..3861036 (-) 645 WP_085227843.1 maleylacetoacetate isomerase -
  Q5O05_RS17370 (Q5O05_17345) - 3861064..3861777 (-) 714 WP_085227842.1 fumarylacetoacetate hydrolase family protein -
  Q5O05_RS17375 (Q5O05_17350) ybiB 3862055..3863023 (+) 969 WP_085227841.1 DNA-binding protein YbiB -
  Q5O05_RS17380 (Q5O05_17355) leuA 3863426..3865081 (+) 1656 WP_085227840.1 2-isopropylmalate synthase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 42344.52 Da        Isoelectric Point: 5.1600

>NTDB_id=862590 Q5O05_RS17360 WP_085227844.1 3859089..3860297(+) (pilA) [Trinickia caryophylli strain ATCC 25418]
MFSFFKRFKGSKSPETVEEQHSPAEAPAAAPTATVPAEPQPPAAPAPSPAPAAQTPQIPQAPAPAPASTSVSQQSTAPAQ
PAAASGIEQEEVEIVPPPAPEPAAKQSWLARLRSGLSKTSAGITGIFVGTKIDDALYEELETALLMSDAGVEATEYLLRA
LREKVREDRLTDPQQVKTALRSLLVDLLKPLEKSLMLGRAQPMVMMIAGVNGAGKTTSIGKLAKHLQSFQQSVLLAAGDT
FRAAAREQLAIWGQRNNVTVVAQESGDPAAVIFDAVTAARARGIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAMDDAP
HEVLLVIDANTGQNALAQVKAFDDALSLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFSAEEFADAL
LG

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=862590 Q5O05_RS17360 WP_085227844.1 3859089..3860297(+) (pilA) [Trinickia caryophylli strain ATCC 25418]
ATGTTCAGTTTTTTCAAGCGATTCAAGGGCTCGAAGTCGCCCGAAACCGTCGAGGAACAACACTCGCCCGCCGAGGCGCC
GGCCGCCGCCCCCACGGCAACGGTGCCCGCCGAGCCGCAGCCGCCGGCTGCACCTGCACCCTCGCCGGCCCCCGCCGCTC
AAACCCCTCAAATCCCTCAGGCTCCTGCGCCTGCGCCCGCTTCCACGTCGGTCTCGCAGCAAAGCACAGCACCCGCACAG
CCCGCCGCGGCGTCCGGCATCGAGCAAGAGGAAGTCGAGATCGTACCGCCCCCGGCACCCGAGCCGGCTGCCAAGCAGTC
GTGGCTCGCGCGTCTGCGCTCGGGGCTCTCGAAAACGAGCGCCGGGATCACAGGCATCTTCGTCGGCACCAAGATCGACG
ACGCGCTCTATGAAGAACTCGAAACGGCACTGCTGATGTCGGATGCAGGCGTGGAGGCAACCGAATACCTGCTCCGCGCG
TTGCGCGAAAAGGTCCGCGAAGACCGGCTGACGGACCCGCAGCAAGTCAAAACGGCGCTGCGCTCGCTGCTCGTCGATCT
GCTGAAGCCGCTCGAGAAATCGTTGATGCTGGGCCGCGCCCAGCCGATGGTCATGATGATCGCAGGCGTGAACGGCGCGG
GTAAAACCACGAGCATCGGCAAGCTCGCCAAGCATCTGCAGAGCTTTCAGCAGTCGGTGCTGCTCGCGGCCGGTGACACG
TTTCGCGCCGCAGCGCGCGAGCAGCTCGCCATCTGGGGCCAGCGCAACAACGTGACGGTCGTCGCGCAGGAAAGCGGCGA
TCCGGCTGCCGTCATCTTCGACGCGGTCACAGCGGCGCGCGCGCGCGGCATCGACGTGGTGATGGCCGATACGGCGGGGC
GCCTGCCCACGCAGTTGCACCTGATGGAAGAGCTACGCAAGGTCAAACGCGTGATCGGCAAGGCCATGGACGACGCCCCG
CACGAGGTCCTGCTCGTCATCGATGCCAACACCGGGCAAAACGCGCTCGCACAGGTGAAGGCGTTCGACGATGCGCTCTC
GCTTACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCCAAAGGCGGTATTCTCGCCGCCATCGCGCGCCAGCGCCCCG
TGCCTGTCTATTTCATCGGCGTGGGCGAAAAAGTCGAAGATCTGCAACCGTTCAGCGCGGAGGAATTTGCCGACGCGCTG
CTCGGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(122-182)

SRP54-type protein, GTPase domain (SRP54)

(203-402)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7ER18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

51.683

100

0.535