Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   Q4617_RS14360 Genome accession   NZ_CP131470
Coordinates   2928911..2929237 (-) Length   108 a.a.
NCBI ID   WP_004958548.1    Uniprot ID   A0A8I0S2H5
Organism   Acinetobacter junii strain SC22     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2923911..2934237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS14340 (Q4617_14340) - 2924167..2924778 (-) 612 WP_112986662.1 FHA domain-containing protein -
  Q4617_RS14345 (Q4617_14345) gspD 2924842..2927097 (-) 2256 WP_004916953.1 type II secretion system secretin GspD -
  Q4617_RS14350 (Q4617_14350) - 2927139..2927987 (-) 849 WP_004957388.1 type II secretion system protein N -
  Q4617_RS14355 (Q4617_14355) gspN 2927987..2928730 (-) 744 WP_005403545.1 type II secretion system protein N -
  Q4617_RS14360 (Q4617_14360) hns 2928911..2929237 (-) 327 WP_004958548.1 H-NS family nucleoid-associated regulatory protein Regulator
  Q4617_RS14365 (Q4617_14365) - 2929620..2930051 (-) 432 WP_004958542.1 thioesterase family protein -
  Q4617_RS14370 (Q4617_14370) - 2930060..2931253 (-) 1194 WP_004916972.1 hypothetical protein -
  Q4617_RS14375 (Q4617_14375) - 2931260..2932090 (-) 831 WP_112986663.1 hypothetical protein -
  Q4617_RS14380 (Q4617_14380) - 2932087..2932863 (-) 777 WP_005403542.1 uroporphyrinogen-III synthase -
  Q4617_RS14385 (Q4617_14385) hemC 2932865..2933782 (-) 918 WP_004916978.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.00 Da        Isoelectric Point: 5.0355

>NTDB_id=862566 Q4617_RS14360 WP_004958548.1 2928911..2929237(-) (hns) [Acinetobacter junii strain SC22]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIAENVGYSVEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=862566 Q4617_RS14360 WP_004958548.1 2928911..2929237(-) (hns) [Acinetobacter junii strain SC22]
ATGAAACCAGATATTAGTGATTTATCTGTTGAAGATCTCAAGCGTTTGCAAGCTGAAGCTGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAAACGTTGGATACAGCGTTGAAGAGCTTT
TGGAGCTTGGTGAGCAAAAACGTAAGAAAACAACCCGTAAAGCTGTTGAGCCGCGTTACCGTAATAAAAATAATGCAGAA
GAAACTTGGACAGGTCGCGGTAAGCAGCCACGTTGGTTAGTTGCAGAATTAGAGAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

90.741

100

0.907