Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   Q4617_RS13315 Genome accession   NZ_CP131470
Coordinates   2715949..2716836 (-) Length   295 a.a.
NCBI ID   WP_004957789.1    Uniprot ID   -
Organism   Acinetobacter junii strain SC22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2710949..2721836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS13295 (Q4617_13295) - 2711318..2712391 (+) 1074 WP_004916462.1 PhoH family protein -
  Q4617_RS13300 (Q4617_13300) ybeY 2712684..2713169 (+) 486 WP_039047584.1 rRNA maturation RNase YbeY -
  Q4617_RS13305 (Q4617_13305) - 2713181..2713480 (+) 300 WP_112986895.1 antibiotic biosynthesis monooxygenase -
  Q4617_RS13310 (Q4617_13310) - 2713545..2715695 (-) 2151 WP_112986894.1 TonB-dependent siderophore receptor -
  Q4617_RS13315 (Q4617_13315) tonB2 2715949..2716836 (-) 888 WP_004957789.1 energy transducer TonB Machinery gene
  Q4617_RS13320 (Q4617_13320) - 2717081..2717758 (+) 678 WP_112986893.1 hypothetical protein -
  Q4617_RS13325 (Q4617_13325) - 2717952..2718668 (+) 717 WP_004916473.1 DUF3108 domain-containing protein -
  Q4617_RS13330 (Q4617_13330) - 2718757..2719332 (+) 576 WP_004916475.1 xanthine phosphoribosyltransferase -
  Q4617_RS13335 (Q4617_13335) thyA 2719491..2720333 (+) 843 WP_004916477.1 thymidylate synthase -
  Q4617_RS13340 (Q4617_13340) - 2720354..2720863 (+) 510 WP_112986892.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33505.04 Da        Isoelectric Point: 8.3911

>NTDB_id=862561 Q4617_RS13315 WP_004957789.1 2715949..2716836(-) (tonB2) [Acinetobacter junii strain SC22]
MWNKINFRSELSSHWWQDSIFVGAVILALLLHLAVLAVQFAMPTPSDTSTKEIAVSIRPSTDKVENADFLAQADQKGSGE
FREAHRMSSDMPSPMQADATTGETEFESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKALEDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLSGEVRLMVILNSQGGIRAIRL
IESSGHSILDEAAKASVRRGAPFGAFDSTMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=862561 Q4617_RS13315 WP_004957789.1 2715949..2716836(-) (tonB2) [Acinetobacter junii strain SC22]
ATGTGGAATAAAATAAATTTTCGTTCGGAGTTGTCATCTCATTGGTGGCAAGACTCAATTTTTGTAGGGGCTGTGATTTT
AGCATTGCTTCTGCATTTGGCTGTGCTTGCAGTACAGTTTGCTATGCCAACTCCATCCGATACCTCCACAAAGGAAATCG
CAGTTTCTATTCGCCCTAGTACTGATAAAGTAGAAAATGCTGATTTTCTCGCTCAAGCCGATCAAAAGGGTTCAGGTGAG
TTTCGAGAAGCACATCGCATGTCGAGTGATATGCCTTCACCGATGCAAGCTGATGCGACTACAGGTGAAACTGAGTTTGA
AAGCTTAGAAAAAATTCAGCAAAAGCGCGAGTTAAAATTTGAAGAAAAAGTTTTAATGACCGTATTGAGCTGGCAGAAAC
AGGCAGAACAAAGCGAGCGTAAAAAAGCCTTAGAGGATTTACAAAGTCAGTTCCAAGCAAAAGCTGCCATGGTTGCTAGT
CTTGAAGCTCAGTATTTACAACGACAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTAGATGGTATTCAAGCTAA
ACAGGATGCTTCTGCTGCGTATCTAGATAAATTCCGCCAAAAAGTTGAGCTGTACGGAAATCGCTATTACCCAGATGCTG
CTAAACAACAGCGGTTATCGGGTGAAGTTAGATTAATGGTTATTCTGAACTCACAGGGTGGGATACGTGCAATTCGTTTA
ATTGAGAGTTCGGGACATTCTATTTTAGATGAAGCAGCTAAGGCTTCAGTGCGCCGTGGAGCCCCTTTTGGTGCATTTGA
TTCAACGATGAAGAAGGATATTTCTGAATTACGTATCATTCGGACTTGGCGTTTTGATCCCGTGGATGCTGAGTTTGAAG
TGCATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769