Detailed information NTG0086254

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ47_RS21060
• Genome accession: NZ_AP027474
• Coordinates: 4333695..4334720 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LR-03
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4328695..4339720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ47_RS21040 (VEE06_40400)	metJ	4329756..4330073 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
AABJ47_RS21045 (VEE06_40410)	yiiX	4330257..4330865 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
AABJ47_RS21050 (VEE06_40420)	rpmE	4330926..4331138 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ47_RS21055 (VEE06_40430)	priA	4331341..4333539 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
AABJ47_RS21060 (VEE06_40440)	cytR	4333695..4334720 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ47_RS21065 (VEE06_40450)	ftsN	4334812..4335771 (+)	960	WP_000068828.1	cell division protein FtsN	-
AABJ47_RS21070 (VEE06_40460)	hslV	4335864..4336394 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABJ47_RS21075 (VEE06_40470)	hslU	4336404..4337735 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
AABJ47_RS21080 (VEE06_40480)	menA	4337802..4338728 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ47_RS21085 (VEE06_40490)	rraA	4338821..4339306 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ47_RS21090 (VEE06_40500)	zapB	4339391..4339636 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=86254 AABJ47_RS21060 WP_000644904.1 4333695..4334720(+) (cytR) [Escherichia coli strain LR-03]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=86254 AABJ47_RS21060 WP_000644904.1 4333695..4334720(+) (cytR) [Escherichia coli strain LR-03]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628