Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   Q6H37_RS28630 Genome accession   NZ_CP131467
Coordinates   6159826..6161181 (-) Length   451 a.a.
NCBI ID   WP_318738447.1    Uniprot ID   A0AAU0NQZ5
Organism   Clostridium sp. JS66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6154826..6166181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6H37_RS28605 (Q6H37_28610) ispD 6155779..6156465 (-) 687 WP_318738437.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  Q6H37_RS28610 (Q6H37_28615) - 6156467..6157570 (-) 1104 WP_318738439.1 PIN/TRAM domain-containing protein -
  Q6H37_RS28615 (Q6H37_28620) - 6157682..6158158 (-) 477 WP_318738441.1 CarD family transcriptional regulator -
  Q6H37_RS28620 (Q6H37_28625) - 6158306..6158710 (+) 405 WP_029163582.1 hypothetical protein -
  Q6H37_RS28625 (Q6H37_28630) disA 6158737..6159810 (-) 1074 WP_318738445.1 DNA integrity scanning diadenylate cyclase DisA -
  Q6H37_RS28630 (Q6H37_28635) radA 6159826..6161181 (-) 1356 WP_318738447.1 DNA repair protein RadA Machinery gene
  Q6H37_RS28635 (Q6H37_28640) - 6161448..6163886 (-) 2439 WP_318738449.1 ATP-dependent Clp protease ATP-binding subunit -
  Q6H37_RS28640 (Q6H37_28645) - 6163906..6164940 (-) 1035 WP_318738452.1 protein arginine kinase -
  Q6H37_RS28645 (Q6H37_28650) - 6164943..6165470 (-) 528 WP_318738455.1 UvrB/UvrC motif-containing protein -
  Q6H37_RS28650 (Q6H37_28655) - 6165537..6166001 (-) 465 WP_318738456.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49613.25 Da        Isoelectric Point: 6.7297

>NTDB_id=862512 Q6H37_RS28630 WP_318738447.1 6159826..6161181(-) (radA) [Clostridium sp. JS66]
MAKNKTIFVCQECAYESLKWLGKCPNCNSWNSMVEETKVQSNSSSLNINSNSLPKSILNIKSSEYERFDTGITELNRVLG
GGIVKGSLTLISGAPGIGKSTLLLQAANSISRKYGKVLYVSGEESEEQIKMRGDRLEAMSSDLYIVSETSIEKIEEHIEN
TKPVFVIVDSIQTLFKQSITSAPGSVSQVRESSNDIMRIGKTKGIPFFIVAHVTKQGELAGPRVLEHMVDTVLSFEGERT
EEFRILRTMKNRFGTTSEIGVFEMRESGLEEVSNPSAVFLEETDFQKEGSIVIGIMEGTRPILIEIQALVSETKAVMPRR
TAVGVDVSRLNLILAVLEKKLKIPFYNCDVYVNVVGGLNIEGTFADLGLALALISSVKSKEINLEKLIVFGEIGLTGEVR
PVAFGDRIVNEAEKMGFKNIVIPARNKEKVKNKSINIIGVSSLKEATNKVF

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=862512 Q6H37_RS28630 WP_318738447.1 6159826..6161181(-) (radA) [Clostridium sp. JS66]
ATGGCAAAAAATAAGACTATTTTTGTATGCCAAGAGTGTGCGTATGAATCATTAAAATGGCTTGGGAAATGTCCTAATTG
TAATAGTTGGAATAGCATGGTTGAGGAAACAAAAGTACAAAGCAACTCATCTAGTCTTAATATAAATTCTAATAGTTTGC
CTAAGAGTATACTAAATATAAAATCTAGTGAATATGAAAGATTTGATACTGGCATAACAGAATTAAATAGAGTATTAGGT
GGCGGAATAGTAAAAGGTTCACTAACTTTAATATCTGGCGCACCGGGTATAGGTAAATCTACATTACTATTACAAGCAGC
AAATAGTATTTCTCGAAAATATGGAAAAGTTCTTTATGTTTCAGGAGAGGAATCCGAAGAACAAATAAAAATGAGAGGCG
ATAGGCTGGAAGCTATGTCTAGTGATTTGTATATAGTTTCTGAGACTAGTATTGAAAAAATAGAGGAACATATAGAGAAT
ACTAAACCTGTTTTTGTTATTGTGGATTCCATACAAACGCTTTTTAAACAATCTATTACTTCTGCACCAGGAAGTGTATC
TCAAGTTCGTGAAAGCTCTAACGATATTATGCGTATAGGGAAAACAAAAGGCATACCATTTTTTATAGTAGCTCATGTTA
CCAAACAAGGTGAATTAGCAGGACCTAGAGTATTAGAACATATGGTGGATACTGTACTATCCTTTGAAGGAGAGAGGACT
GAAGAATTTAGAATACTTAGAACTATGAAAAATCGTTTTGGAACCACTAGTGAGATTGGAGTATTCGAAATGCGAGAAAG
TGGTCTTGAAGAAGTATCAAATCCGTCAGCAGTATTTCTGGAAGAAACTGATTTTCAAAAGGAAGGTTCAATAGTTATAG
GTATAATGGAGGGAACTAGGCCTATATTAATAGAAATACAAGCACTAGTTAGCGAAACTAAGGCAGTAATGCCTAGGAGA
ACTGCAGTTGGTGTAGATGTTTCTAGACTGAATCTTATTTTAGCAGTTTTAGAAAAAAAATTAAAAATACCTTTTTATAA
TTGTGATGTTTATGTTAATGTAGTAGGAGGACTTAATATTGAAGGAACCTTTGCAGATTTAGGATTGGCTTTAGCACTTA
TATCTAGCGTTAAATCTAAGGAAATAAACTTAGAGAAATTAATAGTATTTGGAGAAATAGGACTTACAGGAGAAGTAAGA
CCTGTAGCATTTGGAGACAGAATTGTAAATGAAGCAGAGAAAATGGGATTTAAAAATATTGTCATACCAGCAAGAAATAA
GGAAAAAGTAAAAAATAAAAGTATAAATATTATAGGAGTCTCTTCTCTTAAAGAGGCTACAAATAAAGTTTTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(58-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.655

100

0.528
  radA Streptococcus pneumoniae Rx1

49.339

100

0.497
  radA Streptococcus pneumoniae D39

49.339

100

0.497
  radA Streptococcus pneumoniae R6

49.339

100

0.497
  radA Streptococcus pneumoniae TIGR4

49.339

100

0.497
  radA Streptococcus mitis NCTC 12261

49.339

100

0.497
  radA Streptococcus mitis SK321

49.119

100

0.494